We recently identified a novel human virus classifiable into a third group in the genus Anellovirus, tentatively designated torque teno midi virus (TTMDV), with a circular DNA genome of 3.2 kb and genomic organization resembling those of torque teno virus (TTV) (3.8 to 3.9 kb) and torque teno mini virus (TTMV) (2.8 to 2.9 kb). TTMDV was characterized by extreme genetic diversity similar to the TTV and TTMV genomes. Taking advantage of universal and virus species-specific primers derived from a highly conserved area located just downstream of the TATA box of the TTV, TTMDV, and TTMV genomes, a PCR method with simultaneous amplification of the genomic DNAs of these three anelloviruses in the first round and subsequent differential amplifications of these viruses in the second round was developed. High prevalence of TTMDV viremia was seen in adults ( Torque teno virus (TTV) was first identified in the serum of a patient with posttransfusion hepatitis of unknown etiology in 1997 (29) and was characterized as a small nonenveloped virus with a circular, single-stranded DNA of 3.8 to 3.9 kb, the first virus of this type known to infect humans (22,24,33,38). In 2000, torque teno mini virus (TTMV) was accidentally discovered in the serum of a blood donor by PCR using TTV-specific primers that partially matched homologous sequences in TTMV but generated a noticeably shorter amplicon than that expected for TTV (48). Although TTV and TTMV have a common presumed genomic organization with four open reading frames (ORF1 to ORF4) and harbor a short region of 80 to 160 nucleotides (nt) with high GC content (approximately 90%) in the noncoding region, they exhibit high dissimilarity in terms of genomic length (3.8 to 3.9 kb and 2.8 to 2.9 kb, respectively) and genetic identity (4,8,13,38,45,48,49). Recently, TTV and TTMV have been classified in a newly designated floating genus, Anellovirus (8).Based on the wide range of sequence divergence noted among various TTV isolates, TTV has been classified as having at least 39 genotypes, exhibiting Ͼ30% nucleotide differences from one another, and five major phylogenetic groups (groups 1 to 5) showing Ͼ50% divergence (6,8,37,41). Although the entire nucleotide sequence has been determined for only 13 TTMV isolates, TTMV is also characterized by extreme genetic diversity (4,8,48). This situation has led to considerable problems in classification and the development of methods for screening, genetic characterization, and genotype identification. Therefore, the PCR method for sensitive and specific detection of TTV or TTMV DNA has been repeatedly modified and optimized with the accumulation of genomic sequences (2,4,25,34,47). Improved PCR methods revealed that over 90% of adults are infected with TTV and/or TTMV (16,25,38,42,49). Frequent infection with multiple genotypes of one or both of these viruses in children and adults has been reported (6,7,11,26,38,56). Early acquisition of TTV in infancy has also been reported (20,41).Recently, in the process of searching for small anellovirus (...