Relatively rapid methods for the determination of relative genome molecular mass (Mr) and the estimation of plasmid copy number have been developed. These methods are based on the ability of the Bio-Rad high-pressure liquid chromatography hydroxylapatite column to separate and quantify single-stranded DNA, double-stranded DNA, and plasmid DNA. Genome Mr values were calculated from reassociation kinetics of single-stranded DNA as measured with the hydroxylapatite column. Bacteriophage T4 DNA was used to establish a Cot (moles of nucleotides times seconds per liter), or standard reassociation value. From this Cot value, Cot values for Escherichia coli B, Beggiatoa alba B18LD, and Streptomyces coelicolor were determined by comparative calculations. From those calculated Cot values, the Mr values of 1.96 x 109 for E. coli, 2.02 x 109 for B. alba, and 3.28 x 109 for S. coelicolor were estimated. Plasmid concentration was determined from