Herbaspirillum hiltneri sp. nov., isolated from surface-sterilized wheat roots

Abstract

The genus Herbaspirillum of the Betaproteobacteria mainly comprises diazotrophic bacteria with a potential for endophytic and systemic colonization of a variety of plants. The plant-associated bacterial isolates N3 T , N5 and N9 were derived from surface-sterilized wheat roots. After phylogenetic analysis of 16S rRNA gene sequence data the isolates could be allocated to the genus Herbaspirillum, and 99?9 % similarity to the sequence of Herbaspirillum lusitanum P6-12 T was found. A set of 16S rRNA gene-targeted oligonucleotide probes was developed for the identification of the three novel isolates and H. lusitanum (Hhilu446), and for the specific detection of several other Herbaspirillum species described recently. For higher phylogenetic resolution, the 23S rRNA gene sequences of all members of the genus was sequenced and used to construct a phylogenetic tree. Isolates N3 T , N5 and N9 formed a group that was distinct from all other Herbaspirillum species. In addition, isolate N3T and H. lusitanum P6-12 T exhibited a DNA-DNA hybridization value of only 25 %. The value for DNA-DNA hybridization between N3 T and other members of the genus Herbaspirillum was between 14 and 32 %; DNA-DNA hybridization between strain N3 T and isolates N5 and N9 produced values above 95 %. This places the three isolates as representatives of a novel species within the genus Herbaspirillum. A Biolog GN2 assay supported this conclusion. The major fatty acids were C 16 : 1 v7c, C 16 : 0 and C 18 : 1 v7c, and the DNA G+C content ranged from 60?9 to 61?5 mol%. Therefore these three isolates should be classified within a novel species, for which the name Herbaspirillum hiltneri sp. nov. is proposed. The type strain is N3 T (=DSM 17495 T =LMG 23131 T ).On the basis of comparative sequence analysis of rRNAencoding genes, the genus Herbaspirillum is affiliated phylogenetically to the Betaproteobacteria (Schmid et al., 2005). The genus was first described with the species Herbaspirillum seropedicae (Baldani et al., 1986), which has been isolated from rice, maize and sorghum plants. After detailed taxonomic studies, the mildly plant-pathogenic [Pseudomonas] rubrisubalbicans was reclassified to the genus Herbaspirillum as Herbaspirillum rubrisubalbicans (Baldani et al., 1996).Another species of this genus, Herbaspirillum frisingense, was isolated from the C4-fibre plants Miscanthus spp., Spartina spectinata and Pennisetum purpureum by Kirchhof et al. (2001). From root nodules of garden beans (Phaseolus vulgaris), several strains representing one distinct species were isolated and described as Herbaspirillum lusitanum (Valverde et al., 2003). These root-colonizing Herbaspirillum species were detected not only on the surface of the root, but also as intra-and intercellular colonizers in the root interior (Olivares et al., 1997). These bacteria seem to prefer plants of the family Gramineae as hosts (Kirchhof et al., 2001), but they are also found on other plant species (Baldani et al., 1996). According to Döbereiner et al. (1993), the close associa...

Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov.

“…frisingense (Kirchhof et al 2001) [11], H. hiltneri (Rothballer et al 2006) [12], H. huttiense subsp.…”

Bacterial and Archaeal Diversity in an Iron-Rich Coastal Hydrothermal Field in Yamagawa, Kagoshima, Japan

“…The sequences affiliated to this phylum, except one sequence, were closely related to the genus Herbaspirillum (Table S2). The species of this genus mainly comprise diazotrophic bacteria with potential for endophytic and systemic colonization of a variety of plants (13, 14, 28, 52, 64). All of the validly described species are mesophilic heterotrophs, except one autotrophic species (13).…”

Kontribusi Nitrogen dari Bakteri Endofit pada Tanaman Padi

“…Salah satu hal yang memicu adalah dengan ditemukannya berbagai jenis bakteri endofit diazotrop pada tanaman Graminae seperti tebu, jagung, gandum dan padi [1][2][3]. Bakteri endofit penambat N pada tanaman padi dilaporkan lebih melimpah di batang dibandingkan di akar.…”