Increasing evidence has demonstrated
that cells are individually
heterogeneous. Advancing the technologies for single-cell analysis
will improve our ability to characterize cells, study cell biology,
design and screen drugs, and aid cancer diagnosis and treatment. Most
current single-cell protein analysis approaches are based on fluorescent
antibody-binding technology. However, this technology is limited by
high background and cross-talk of multiple tags introduced by fluorescent
labels. Stable isotope labels used in mass cytometry can overcome
the spectral overlap of fluorophores. Nevertheless, the specificity
of each antibody and heavy-metal-tagged antibody combination must
be carefully validated to ensure detection of the intended target.
Thus, novel single-cell protein analysis methods without using labels
are urgently needed. Moreover, the labeling approach targets already
known motifs, hampering the discovery of new biomarkers relevant to
single-cell population variation. Here, we report a combined microfluidic
and matrix-assisted laser desorption and ionization (MALDI) mass spectrometric
approach for the analysis of protein biomarkers suitable for small
cell ensembles. All necessary steps for cell analysis including cell
lysis, protein capture, and digestion as well as MALDI matrix deposition
are integrated on a microfluidic chip prior to the downstream MALDI-time-of-flight
(TOF) detection. For proof of principle, this combined method is used
to assess the amount of Bcl-2, an apoptosis regulator, in metastatic
breast cancer cells (MCF-7) by using an isotope-labeled peptide as
an internal standard. The proposed approach will eventually provide
a new means for proteome studies in small cell ensembles with the
potential for single-cell analysis and improve our ability in disease
diagnosis, drug discovery, and personalized therapy.