In this paper, a logic computing model was constructed using a DNA nanoparticle, combined with color change technology of DNA/Au nanoparticle conjugates, and DNA computing. Several important technologies are utilized in this molecular computing model: DNA self-assembly, DNA/Au nanoparticle conjugation, and the color change resulting from Au nanoparticle aggregation. The simple logic computing model was realized by a color change, resulting from changing of DNA self-assembly. Based on this computing model, a set of operations computing model was also established, by which a simple logic problem was solved. To enlarge the applications of this logic nanocomputing system, a molecular detection method was developed for H1N1 virus gene detection. In the area of computing research, molecular computing has gradually grown from pure theory to experimental realization. In particular, DNA computing has become a leader in molecular computing, because of its advantages in nanotechnology operations. At the beginning of DNA computing, scientists attempted to solve certain difficult mathematical problems, such as the satisfiability problem, the graph coloring problem, the maximal clique problem, and the maximum independent set problem [1][2][3][4]. Despite the difficulty in comparing DNA computing, with traditional electronic computing, its potential in huge parallel computing remains an attractive focus. In the area of information science, logic computing is a basic unit of computing. Thus, it is important to utilize molecules to implement logic computing, in which the molecules play a significant role. Many kinds of materials could be used to construct to logic gates, such as nucleic acids, and enzymes [5][6][7][8][9][10][11]. Logic systems based on DNA have attracted the most attention [12][13][14][15]. Recently, the combination of DNA self-assembly and nanoparticles has become a research hot spot [16][17][18][19]. A nanoparticle is a type of tiny particle at the nanometers scale. Commonly used nanoparticles are Au, Ag, and semi-conductor quantum dots. Importantly, the most widely used is the gold nanoparticle (AuNP), which is stable, uniform, and has strong chemical binding ability.In this paper, a logic computing model was constructed using DNA nanoparticles, combined with the color change technology of the DNA/Au nanoparticle conjugates and DNA computing. The simple logic computing is realized by a color change, resulting from a change in DNA self-assembly. Meanwhile, a set operation computing model was also established, by which a simple logic problem was solved. To enlarge the applications of this logic nanocomputing system, a molecular detection method was developed for H1N1 virus gene detection. Importantly, several critical technologies are utilized in this molecular computing model: DNA