The small hydrophobic E5 protein of Human Papillomavirus type 16 (HPV16) binds to the 16-kDa subunit of the V-H + -ATPase. This binding has been suggested to interfere with acidi®cation of late endocytic structures. We here used video microscopy, ratio imaging and confocal microscopy of living C127 ®broblasts to study the e ects of E5. Various endocytic markers including the pH-sensitive probe DM-NERF coupled to dextran, TransFluoSpheres and TRITC-concanavalin A, were applied. In E5-transfected cells, none of these markers colocalized with the membrane permeable probe LysoTracker Red, which accumulates in acidic, late endocytic structures, or with a green¯uorescent version of the small GTPase Rab7 labeling late endocytic structures. Importantly, however, late endocytic structures accumulating LysoTracker were still present in the E5-transfected cells. It is therefore concluded that HPV16 E5 perturbs tra cking from early to late endocytic structures rather than acidi®cation. Oncogene (2000) 19, 6023 ± 6032.