Superimposed on traditional controls on manganese nodule compositional variability, such as metal source and nodule mineralogy, are additional controls related to biological productivity, water depth, the depth of the calcite compensation depth (CCD) and the nature of the associated sediments. Fluxes of Mn, Ni, and Cu to the nodules increase in equatorial regions of high biological productivity but high values of these metals in south equatorial Pacific nodules appear to occur only within about 200 m of the CCD. This is thought to result from the concentration of labile organic matter there, the decay of which fuels the diagenetic reactions leading to Mn, Ni, and Cu enrichment in the nodules. However, this process appears to be at its most intense on the flanks of the South Pacific equatorial high productivity zone. Under the most highly productive waters, Mn, Ni, and Cu rich nodules do not occur at any depth nor are nodules abundant there. This is thought to be due to the presence of biogenic silica, the concentration of which is not depth dependent, as the main diluent of the labile organic material at depths near and below the CCD under the most highly productive waters.