Genome-Wide Identification and Analysis of Genes, Conserved between japonica and indica Rice Cultivars, that Respond to Low-Temperature Stress at the Vegetative Growth Stage

Kumar, Manu; Gho, Yun-Shil; Jung, Ki‐Hong; Kim, Seong-Ryong

doi:10.3389/fpls.2017.01120

Cited by 34 publications

(23 citation statements)

References 145 publications

(134 reference statements)

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“…WRKY transcription factors are also considered as master regulators of molecular reprogramming to enhance the stress tolerance of plants [51]. Transcription factor WRKY71 has been shown to help evade salt stress in Arabidopsis and enhance cold tolerance in rice [52,53]. DEG analysis revealed that OsWRKY71 showed upregulation (6.00-fold) in OsEXPA7-OX plants under salt stress ( Figure 10E), which was confirmed by qRT-PCR results.…”

Section: Genes Involved In Salt Stress Tolerance Were Significantly Amentioning

confidence: 53%

Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice

Jadamba

Kang

Paek

et al. 2020

IJMS

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Expansins are key regulators of cell-wall extension and are also involved in the abiotic stress response. In this study, we evaluated the function of OsEXPA7 involved in salt stress tolerance. Phenotypic analysis showed that OsEXPA7 overexpression remarkably enhanced tolerance to salt stress. OsEXPA7 was highly expressed in the shoot apical meristem, root, and the leaf sheath. Promoter activity of OsEXPA7:GUS was mainly observed in vascular tissues of roots and leaves. Morphological analysis revealed structural alterations in the root and leaf vasculature of OsEXPA7 overexpressing (OX) lines. OsEXPA7 overexpression resulted in decreased sodium ion (Na+) and accumulated potassium ion (K+) in the leaves and roots. Under salt stress, higher antioxidant activity was also observed in the OsEXPA7-OX lines, as indicated by lower reactive oxygen species (ROS) accumulation and increased antioxidant activity, when compared with the wild-type (WT) plants. In addition, transcriptional analysis using RNA-seq and RT-PCR revealed that genes involved in cation exchange, auxin signaling, cell-wall modification, and transcription were differentially expressed between the OX and WT lines. Notably, salt overly sensitive 1, which is a sodium transporter, was highly upregulated in the OX lines. These results suggest that OsEXPA7 plays an important role in increasing salt stress tolerance by coordinating sodium transport, ROS scavenging, and cell-wall loosening.

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Section: Genes Involved In Salt Stress Tolerance Were Significantly Amentioning

confidence: 53%

Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice

Jadamba

Kang

Paek

et al. 2020

IJMS

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“…Based on GO analysis, CaChi genes imply a role in different stresses, in support of our study. Kumar et al (2017) [65] also investigated the OsWRKY71 gene enhanced cold tolerance and mainly involved in metabolic as well as in regulatory pathways in rice, while Eroglu and Aksoy (2017) [66] studied COP9 response under Fe deficiency in Arabidopsis. Hence, we extended our study to investigate the expression analysis of eight representative CaChi after salt (NaCl), cold (6 °C) and drought (mannitol) stresses (Figure 8).…”

Section: Discussionmentioning

confidence: 99%

Classification and Genome-Wide Analysis of Chitin-Binding Proteins Gene Family in Pepper (Capsicum annuum L.) and Transcriptional Regulation to Phytophthora capsici, Abiotic Stresses and Hormonal Applications

Ali

Luo

Khan

et al. 2018

IJMS

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Chitin-binding proteins are pathogenesis-related gene family, which play a key role in the defense response of plants. However, thus far, little is known about the chitin-binding family genes in pepper (Capsicum annuum L.). In current study, 16 putative chitin genes (CaChi) were retrieved from the latest pepper genome database, and were classified into four distinct classes (I, III, IV and VI) based on their sequence structure and domain architectures. Furthermore, the structure of gene, genome location, gene duplication and phylogenetic relationship were examined to clarify a comprehensive background of the CaChi genes in pepper. The tissue-specific expression analysis of the CaChi showed the highest transcript levels in seed followed by stem, flower, leaf and root, whereas the lowest transcript levels were noted in red-fruit. Phytophthora capsici post inoculation, most of the CaChi (CaChiI3, CaChiIII1, CaChiIII2, CaChiIII4, CaChiIII6, CaChiIII7, CaChiIV1, CaChiVI1 and CaChiVI2) were induced by both strains (PC and HX-9). Under abiotic and exogenous hormonal treatments, the CaChiIII2, CaChiIII7, CaChiVI1 and CaChiVI2 were upregulated by abiotic stress, while CaChiI1, CaChiIII7, CaChiIV1 and CaChiIV2 responded to hormonal treatments. Furthermore, CaChiIV1-silenced plants display weakened defense by reducing (60%) root activity and increase susceptibility to NaCl stress. Gene ontology (GO) enrichment analysis revealed that CaChi genes primarily contribute in response to biotic, abiotic stresses and metabolic/catabolic process within the biological process category. These results exposed that CaChi genes are involved in defense response and signal transduction, suggesting their vital roles in growth regulation as well as response to stresses in pepper plant. In conclusion, these finding provide basic insights for functional validation of the CaChi genes in different biotic and abiotic stresses.

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“…In plants, abiotic stress positively triggers the levels of ABA and reactive oxygen species (ROS) [75] such as H 2 O 2 [76][77][78][79]. High H 2 O 2 levels trigger cytosolic calcium concentration via nitric oxide (NO) [80,81].…”

Section: Calcium Signaling Integration With Aba Signaling Pathway Andmentioning

confidence: 99%

Integration of Abscisic Acid Signaling with Other Signaling Pathways in Plant Stress Responses and Development

Kumar

Kesawat

Ali

et al. 2019

Plants

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Plants are immobile and, to overcome harsh environmental conditions such as drought, salt, and cold, they have evolved complex signaling pathways. Abscisic acid (ABA), an isoprenoid phytohormone, is a critical signaling mediator that regulates diverse biological processes in various organisms. Significant progress has been made in the determination and characterization of key ABA-mediated molecular factors involved in different stress responses, including stomatal closure and developmental processes, such as seed germination and bud dormancy. Since ABA signaling is a complex signaling network that integrates with other signaling pathways, the dissection of its intricate regulatory network is necessary to understand the function of essential regulatory genes involved in ABA signaling. In the present review, we focus on two aspects of ABA signaling. First, we examine the perception of the stress signal (abiotic and biotic) and the response network of ABA signaling components that transduce the signal to the downstream pathway to respond to stress tolerance, regulation of stomata, and ABA signaling component ubiquitination. Second, ABA signaling in plant development processes, such as lateral root growth regulation, seed germination, and flowering time regulation is investigated. Examining such diverse signal integration dynamics could enhance our understanding of the underlying genetic, biochemical, and molecular mechanisms of ABA signaling networks in plants. 592 2 of 20 and developmental stages, plants were experiencing drought stress [5,[9][10][11][12][13][14][15][16][17]. Therefore, ABA is a misnomer [18], even though it plays a role in leaf senescence and seed dormancy, potentially via osmotic effects [19][20][21]. It has been observed that drought-stressed vegetative tissues of numerous plants accumulate ABA (40-fold induction) within hours of osmotic stress and then it decreases after rehydration. In addition, ABA has been considered a long-distance stress signal between shoots and roots [22]. Therefore, the study of spatiotemporal expression of genes that control ABA metabolism's rate-limiting steps is essential for understanding how plants adapt to stress. Other than its role in adaptation to abiotic stress, ABA has been shown to be a key regulator of pathogen virulence [23][24][25][26][27], which could offer insights into the basis of the ABA-synthesizing ability of numerous bio-and necrotrophic microbes [24,[28][29][30].Gene products acting in the vicinity of the cell wall or at the interface of the plasma membrane/cytoskeleton/cell wall are considered the most likely elements to participate in initial stress perception. For instance, gated aquaporins (plasma membrane intrinsic proteins (PIPs)) and osmo-/ion channels at the cell wall-plasma membrane interface may be implicated in the upstream perception [31][32][33]. The receptor of ABA remained unknown until 2009. Before then, several ABA receptors had been reported [34][35][36][37][38][39][40]; however, further investigations did not substantiate any o...

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Genome-Wide Identification and Analysis of Genes, Conserved between japonica and indica Rice Cultivars, that Respond to Low-Temperature Stress at the Vegetative Growth Stage

Cited by 34 publications

References 145 publications

Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice

Overexpression of Rice Expansin7 (Osexpa7) Confers Enhanced Tolerance to Salt Stress in Rice

Classification and Genome-Wide Analysis of Chitin-Binding Proteins Gene Family in Pepper (Capsicum annuum L.) and Transcriptional Regulation to Phytophthora capsici, Abiotic Stresses and Hormonal Applications

Integration of Abscisic Acid Signaling with Other Signaling Pathways in Plant Stress Responses and Development

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