Genome sequence of Vibrio sp. OULL4 isolated from shellfish

Letchumanan, Vengadesh; Tan, Wen-Si; Yin, Wai‐Fong; Chan, Kok‐Gan

doi:10.36877/pmmb.a0000066

Cited by 11 publications

(12 citation statements)

References 46 publications

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“…The whole genomic DNA of MUM 13 was extracted using Masterpure™ DNA purification kit (Epicentre, Illumina Inc., Madison, WI, USA) before RNase treatment [39][40][41] . The construction of the DNA library was done using Nextera™ DNA Sample Preparation kit (Nextera, USA), while its quality was accessed with Bioanalyzer 2100 high sensitivity DNA kit (Agilent Technologies, Palo Alto, CA) [42][43][44] . Whole-genome sequencing (paired-end) was done on the Illumina MiSeq platform with MiSeq Reagent Kit 2 (2 × 250 bp; Illumina Inc., Madison, WI, USA) [44][45][46][47] .…”

Section: Data Descriptionmentioning

confidence: 99%

Whole genome sequence of Peribacillus sp. MUM 13 derived from mangrove forest in Malaysia

Ser¹,

Law²,

Tan³

et al. 2021

Prog Drug Discov Biomed Sci

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Acting like mini-factories, microorganisms are a valuable source of naturalbioactive compounds of unique chemical structures. Peribacillus sp. MUM 13 was recoveredfrom the mangrove forest in Malaysia during a screening program for bioactive microbes.Whole genome analysis revealed that the genome size of MUM 13 as 4,649,225 bp (with G+ C content of 40.8 %). Bioinformatic analysis predicted the presence of lassopeptidebiosynthetic gene clusters within the genome of MUM 13, which indicates the bioactivepotential of the strain and calls for further experiments to explore the strain characteristics,particularly in combatting against pathogenic microbes.

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Section: Data Descriptionmentioning

confidence: 99%

Whole genome sequence of Peribacillus sp. MUM 13 derived from mangrove forest in Malaysia

Ser¹,

Law²,

Tan³

et al. 2021

Prog Drug Discov Biomed Sci

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“…2019; Letchumanan et al . 2020) Figure 1 illustrates the distribution of antibiotic‐resistant Vibrio sp. around the world (Fig.…”

Section: Factors Influencing Antibiotic Resistance Of Vibrio Spmentioning

confidence: 99%

Incidence of antibiotic resistance in Vibrio spp

Loo

Letchumanan

Law

et al. 2020

Reviews in Aquaculture

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Vibrio species is a common natural inhabitant of brackish and saltwater. Vibrio sp. includes not only emerging pathogens but also well‐known and emerged pathogens, such as V. cholerae, V. parahaemolyticus and V. vulnificus. Although it is often harmless, pathogenic strains which could cause serious food‐borne illnesses/outbreaks in both humans and animals have been identified. Vibrio infection is usually self‐limiting and requires no clinical treatment. However, antibiotics are still required to treat severe cases of Vibrio infection. Recent reports have highlighted a rise in the presence of antibiotic‐resistant Vibrio in the environment. This hampers the clinical treatment of Vibrio infection and has been linked to the imprudent use of antibiotics in various fields such as human medicine, agriculture and animal husbandry. As a result, it has greatly jeopardized food security, threatened public health and impugned the growth of economy. Food is a potential vehicle of antibiotic‐resistant Vibrio where the resistant genes are transmitted to humans via ingestion of contaminated food. Hence, the surveillance, monitoring and management of antibiotic patterns of Vibrio are important for clinical treatment. This review focuses on different trends and global patterns of antibiotic resistance of Vibrio.

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“…28 An increasing number of pathogens are becoming insensitive to antibiotic treatment due to the harbouring of antimicrobial-resistant genes (ARGs) as a consequence of excessive and inappropriate usage of antibiotics. [29][30][31][32][33][34] It is alarming to note that these genes may persist in the environment for years even after the cessation of antibiotics in the absence of selection pressure. [35][36][37] Moreover, there is a risk for this resistance to pass down the food chain, which will eventually culminate in extreme susceptibility of human consumers to common infections.…”

Section: Introductionmentioning

confidence: 99%

“…However, the indiscriminate use of antibiotics in aquafarming practices is slowly precipitating the development of antimicrobial resistance (AMR) 28 . An increasing number of pathogens are becoming insensitive to antibiotic treatment due to the harbouring of antimicrobial‐resistant genes (ARGs) as a consequence of excessive and inappropriate usage of antibiotics 29‐34 . It is alarming to note that these genes may persist in the environment for years even after the cessation of antibiotics in the absence of selection pressure 35‐37 .…”

Section: Introductionmentioning

confidence: 99%

Harnessing the potentialities of probiotics, prebiotics, synbiotics, paraprobiotics, and postbiotics for shrimp farming

Goh

Tan

Law

et al. 2022

Reviews in Aquaculture

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The shrimp farming industry is receiving increasing attention globally. However, extending the frontiers of the industry has been a challenge as high stocking density often increases susceptibility to diseases and compromises shrimp quality. There has been a huge adoption of bacterial‐derived additives in recent decades, particularly in Asia. Accumulating evidence demonstrates the modulatory effect of these functional additives on the animal gut microbiota composition, thus making them potential alternatives to antibiotics in controlling infectious diseases, such as acute hepatopancreatic necrosis disease (AHPND). These functional additives could be introduced in various forms, such as probiotics, synbiotics, paraprobiotics, and postbiotics. This article aims to critically review previous studies that investigated the effects of these bacterial derivatives, particularly on shrimp species. The surge of research in recent years indirectly attested to the immense potentialities of these functional additives. Generally, the introduction of bacterial derivatives not only helped in disease control but also demonstrated encouraging outcomes, including better survival rate, immune enhancement, and growth promotion effects. It is interesting to note that the effectiveness of probiotics extended beyond the viability of the bacteria, thus leading to concepts such as paraprobiotics and postbiotics. Although this is a relatively new research area with limited information, this review aims to consolidate available data and provide a comprehensive overview of the state of the art of this research arena. The challenges in each research domain were also discussed towards the end of this review to provide insights into potential future research niches.

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Genome sequence of Vibrio sp. OULL4 isolated from shellfish

Cited by 11 publications

References 46 publications

Whole genome sequence of Peribacillus sp. MUM 13 derived from mangrove forest in Malaysia

Whole genome sequence of Peribacillus sp. MUM 13 derived from mangrove forest in Malaysia

Incidence of antibiotic resistance in Vibrio spp

Harnessing the potentialities of probiotics, prebiotics, synbiotics, paraprobiotics, and postbiotics for shrimp farming

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