introduction One of the earliest events in the formation of an atherosclerotic lesion is the adherence of circulating monocytes to the vascular endothelium, through which they then gain entry to the sub-intimal tissue. This early lesion subsequently evolves over a number of years to form an atherosclerotic plaque, through the migration and proliferation of cells, the accumulation of lipid in the vessel wall and through the extensive deposition and modification of a connective tissue matrix. Pathological studies have described a wide spectrum of structural architecture in atherosclerotic plaques which suggests that, with time, the vascular connective tissue matrix is extensively modified during atherogenesis. This process of vascular connective tissue remodelling, where matrix macromolecules are both deposited and degraded, is controlled by a complex network of cell-cell and cell-matrix interactions, involving the secretion of a wide variety of growth factors and cytokines and chemokines.Atherosclerosis is an example of a complex trait. That is, the natural history of the disease is influenced by a combination of common variation in a constellation of genes and the effect of a wide range of environmental variables. Thus, the mechanisms underlying the development of the disease, as outlined above, will be modulated by genetic diversity and the effect this has on an individual's response to environmental challenges such as smoking, diet and exercise. Unlike the consequences on protein function of mutations in severe single gene disorders, the impact of individual common, functionally important sequence changes in genes contributing to multifactorial diseases is likely to be very small. The challenge for us is to dissect the contribution that each of our candidate genes makes to the complex disease process. We have tackled this, as have many others, through a strategy aimed at increasing our understanding of how common genetic variation affects function, combined with the use of well-structured and suitably powered association studies.Even with our incomplete understanding of the complex pathophysiological processes operating in atherogenesis, the list of potential candidate genes we could study is vast. We have focused our attentions on the family of enzymes and inhibitors which are most directly