“…Furthermore, differences in underlying geology generate soils that are generally more freely draining in the east than in the west (Mason, Hampson, & Edwards, 2004). Previous work has demonstrated genetic differences among these populations for cold tolerance, phenology, needle characters, and pathogen tolerance that are consistent with adaptation to the environmental variation experienced across Scotland (Donnelly, Cavers, Cottrell, & Ennos, 2016;Perry et al, 2016;Salmela, Cavers, Cottrell, Iason, & Ennos, 2013;Salmela et al, 2011). Here, we investigate whether there is evidence for local adaptation for tolerance of waterlogging among present-day Caledonian pine populations, and assess the extent of cryptic genetic variation for the trait under flooded conditions.…”