The dataset presented here was collected by the GenTree project (EU-Horizon 2020), which aims to improve the use of forest genetic resources across Europe by better understanding how trees adapt to their local environment. This dataset of individual tree-core characteristics including ring-width series and whole-core wood density was collected for seven ecologically and economically important European tree species: silver birch (Betula pendula), European beech (Fagus sylvatica), Norway spruce (Picea abies), European black poplar (Populus nigra), maritime pine (Pinus pinaster), Scots pine (Pinus sylvestris), and sessile oak (Quercus petraea). Tree-ring width measurements were obtained from 3600 trees in 142 populations and whole-core wood density was measured for 3098 trees in 125 populations. This dataset covers most of the geographical and climatic range occupied by the selected species. The potential use of it will be highly valuable for assessing ecological and evolutionary responses to environmental conditions as well as for model development and parameterization, to predict adaptability under climate change scenarios.
Spanish Cedar (Cedrela odorata L.) is a globally important timber species which has been severely exploited in Mesoamerica for over 200 years. Using polymerase chain reaction-restriction fragment length polymorphisms, its chloroplast (cp) DNA phylogeography was studied in Mesoamerica with samples from 29 populations in six countries. Five haplotypes were characterized, phylogenetically grouped into three lineages (Northern, Central and Southern). Spatial analysis of ordered genetic distance confirmed deviation from a pattern of isolation by distance. The geographically proximate Northern and Central cpDNA lineages were genetically the most differentiated, with the Southern lineage appearing between them on a minimum spanning tree. However, populations possessing Southern lineage haplotypes occupy distinct moist habitats, in contrast to populations possessing Northern and Central lineage haplotypes which occupy drier and more seasonal habitats. Given the known colonization of the proto-Mesoamerican peninsula by South American flora and fauna prior to the formation of the Isthmus of Panama, it seems most likely that the observed population structure in C. odorata results from repeated colonization of Mesoamerica from South American source populations. Such a model would imply an ancient, pre-Isthmian colonization of a dry-adapted type (possessing the Northern lineage or a prototype thereof), with a secondary colonization via the land bridge. Following this, a more recent (possibly post-Pleistocene) expansion of moist-adapted types possessing the Southern lineage from the south fits the known vegetation history of the region.
Kremer, Antoine. 2017. Adaptive and plastic responses of Quercus petraea populations to climate across Europe. Global Change Biology, 23 (7). 2831-2847. 10.1111/gcb.13576 Contact CEH NORA team at noraceh@ceh.ac.ukThe NERC and CEH trademarks and logos ('the Trademarks') are registered trademarks of NERC in the UK and other countries, and may not be used without the prior written consent of the Trademark owner. Accepted ArticleThis article has been accepted for publication and undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1111/gcb.13576 This article is protected by copyright. All rights reserved. Accepted ArticleThis article is protected by copyright. All rights reserved. Accepted ArticleThis article is protected by copyright. All rights reserved. †Corresponding author: E-mail: antoine.kremer@pierroton.inra.fr Phone: + (33) 5 5712- 2832.Keywords: Climatic change, Climatic transfer distance, Mixed model, Quercus petraea, Survival, Tree growth.Paper Type: Primary Research. AbstractHow temperate forests will respond to climate change is uncertain; projections range from severe decline to increased growth. We conducted field tests of sessile oak (Quercus petraea), a widespread keystone European forest tree species, including more than 150,000 trees sourced from 116 geographically diverse populations. The tests were planted on 23 field sites in six European countries, in order to expose them to a wide range of climates, including sites reflecting future warmer and drier climates. By assessing tree height and survival, our objectives were twofold: (1) to identify the source of differential population responses to climate (genetic differentiation due to past divergent climatic selection versus plastic responses to ongoing climate change), (2) to explore which climatic variables (temperature or precipitation) trigger the population responses. Tree growth and survival were modeled for contemporary climate and then projected using data from four regional climate models for years 2071-2100, using two greenhouse gas concentration trajectory scenarios each. Overall results indicated a moderate response of tree height and survival to climate variation, with changes in dryness (either annual or during the growing season) Accepted ArticleThis article is protected by copyright. All rights reserved.explaining the major part of the response. Whilst, on average, populations exhibited local adaptation, there was significant clinal population differentiation for height growth with winter temperature at the site of origin. The most moderate climate model (HIRHAM5-EC; rcp4.5) predicted minor decreases in height and survival, whilst the most extreme model (CCLM4-GEM2-ES; rcp8.5) predicted large decreases in survival and growth for southern and southeastern edge populations (Hungary and Turkey). Other non-marginal populations with continental climate...
Summary1. Many flowering plant species have a facultative or obligate dependence on insect pollination for reproductive success. Anthropogenic disturbance may alter these species interactions, but the extent to which structural changes to plant-pollinator networks affect plant species mating systems is not well understood. 2. We used long-term livestock grazing of a birch wood ecosystem to test whether disturbance of this semi-natural habitat altered floral resources, the structure of plant-insect visitation networks and the mating system of a focal plant species, Cirsium palustre. 3. Grazed habitat had a higher species richness of floral resources for pollinators. Visitation networks in grazed habitats were larger, more diverse, with an increase in the number of pollinators per plant species. Controlling for sampling effects, however, showed networks in grazed habitats were less nested and revealed a positive correlation between network connectance and floral species richness. 4. Network connectance was negatively related to C. palustre outcrossing rate within grazed and ungrazed sites. However, on average, the effects of grazing, including greater mean connectance, produced higher overall outcrossing rates and more pollen donors compared with ungrazed habitat. The number of different pollen donors, spatial genetic structure and mating among close relatives were all correlated with greater extent of suitable C. palustre habitat in the landscape, consistent with the effects of increasing plant population size but limited seed dispersal. 5. Pre-adaptation of C. palustre to disturbance coupled with a preponderance of highly dispersive flies attracted to the greater food resources in grazed habitat is a likely mechanism underpinning this increased pollen transport. 6. Habitat modification by long-term mammalian grazing fundamentally shifted visitation network structure and the state of a plant mating system, indicating how ecosystem disturbance can cascade across levels of biological organization through altered interspecific interactions. Cirsium palustre retains flexibility to bias reproduction towards selfing where pollen donor diversity is limited; such reproductive flexibility may be an important mechanism structuring plant populations in human-modified landscapes.
Fine-scale spatial genetic structure (SGS) in natural tree populations is largely a result of restricted pollen and seed dispersal. Understanding the link between limitations to dispersal in gene vectors and SGS is of key interest to biologists and the availability of highly variable molecular markers has facilitated fine-scale analysis of populations. However, estimation of SGS may depend strongly on the type of genetic marker and sampling strategy (of both loci and individuals). To explore sampling limits, we created a model population with simulated distributions of dominant and codominant alleles, resulting from natural regeneration with restricted gene flow. SGS estimates from subsamples (simulating collection and analysis with amplified fragment length polymorphism (AFLP) and microsatellite markers) were correlated with the 'real' estimate (from the full model population). For both marker types, sampling ranges were evident, with lower limits below which estimation was poorly correlated and upper limits above which sampling became inefficient. Lower limits (correlation of 0.9) were 100 individuals, 10 loci for microsatellites and 150 individuals, 100 loci for AFLPs. Upper limits were 200 individuals, five loci for microsatellites and 200 individuals, 100 loci for AFLPs. The limits indicated by simulation were compared with data sets from real species. Instances where sampling effort had been either insufficient or inefficient were identified. The model results should form practical boundaries for studies aiming to detect SGS. However, greater sample sizes will be required in cases where SGS is weaker than for our simulated population, for example, in species with effective pollen/seed dispersal mechanisms. Heredity (2005) 95, 281-289.
The NERC and CEH trade marks and logos ('the Trademarks') are registered trademarks of NERC in the UK and other countries, and may not be used without the prior written consent of the Trademark owner. 2 The level of genetic diversity and population structure of Acacia senegal variety kerensis 3 in Kenya was examined using seven polymorphic nuclear microsatellite loci and two 4 chloroplast microsatellite loci. In both chloroplast and nuclear datasets, high levels of 5 genetic diversity were found within all populations and genetic differentiation among
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