Dedicated to Dieter Seebach on the occasion of his 65th birthdayIn the context of broadening the knowledge on substrate specificity of Herpes simplex virus type 1 thymidine kinase (HSV-1 TK) and Varicella-Zoster virus thymidine kinase (VZV TK), new derivatives of 9-(2-hydroxypropyl)-substituted adenine, chloropurine, hypoxanthine, guanine, thiopurine, and (methylsulfanyl)-purine were synthesized and subjected to in vitro phosphorylation and binding affinity assays. The interactions between the compounds and the crystallographically determined active site residues of HSV-1 TK have been studied by molecular modeling with the Lamarckian genetic algorithm of docking program AutoDock 3.0. All compounds mentioned bind to both enzymes in the low mm to sub-mm range, comparable to binding affinities of existing prodrugs. Findings from the docking procedure indicate multiple binding modes for all of the compounds and are in accordance with the results of phosphorylation and binding-affinity studies. Furthermore, the studies reveal that hypoxanthine derivatives represent a new class of TK substrates and thiopurine derivatives a new class of TK inhibitors.Introduction. ± Herpesviral thymidine kinases belong to the pyrimidine salvage pathway and phosphorylate thymidine (dT), leading to thymidine monophosphate (dTMP). Herpes simplex virus type 1 thymidine kinase (HSV-1 TK) and VaricellaZoster thymidine kinase (VZV TK) play a key role in pathogenesis and reactivation [1 ± 3]. Aciclovir (9-[(2-hydroxyethoxy)methyl]guanine; ACV), penciclovir (9-[4-hydroxy-3-(hydroxymethyl)butyl]guanine; PCV), and other prodrugs are therapeutic compounds, which interfere with acute herpes-virus infections [4]. After being activated exclusively by the viral TK, these molecules act as fraudulent substrates of DNA-polymerases, blocking DNA replication by dead-end complexes with the viral DNA. The molecular basis of the therapy, which uses viral TK as selectivity filter, is the difference in substrate specificity between the herpesviral TK and the human cellular isoenzyme. Furthermore, HSV-1 TK and VZV TK in combination with ganciclovir (9-{[2-hydroxy-1-(hydroxymethyl)ethoxy]methyl}guanine; GCV) and bromovinyldeoxyuridine (BVDU), respectively, are more recently used as suicide enzymes in gene