“…Isolates that exhibited phenotypic resistance to particular antimicrobial agents for which associated resistance genes were not detected by the DNA microarray, or for which resistance genes were detected but partial or none of the associated resistance phenotypes were detected, were further investigated by PCR to confirm the presence or absence of these resistance genes. These investigations included PCRs using previously described primers to detect mupA (36), aphA3 (37), aacA-aphD (37), fusB (38), tet(K) (36), tet(M) (36), aadD (39), and qacA (40), and also novel primers to detect qacC, msr(A), dfrS1, lnu(A), mph(C), and blaZ (see Table S1 in the supplemental material).…”