Fodinicola feengrottensis gen. nov., sp. nov., an actinomycete isolated from a medieval mine

Carlsohn, Marc René; Groth, Ingrid; Saluz, Hans‐Peter; Schümann, Peter; Stackebrandt, Erko

doi:10.1099/ijs.0.65512-0

Cited by 27 publications

(9 citation statements)

References 54 publications

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“…The menaquinones were MK-9(H 4 ) (25%), MK-9(H 6 ) (36%) and MK-9(H 8 ) (39%). All chemotaxonomic results revealed that strain GKU 173 T shared apparent characteristics with the only member of the genus Fodinicola particularly, the presence of xylose as the diagnostic cell-wall sugar [11]. Altogether, chemotaxonomic and phenotypic data evidently constitute strain GKU 173 T as a novel species within the genus Fodinicola.…”

Section: Chemotaxonomic Analysismentioning

confidence: 85%

“…The positions of strain GKU 173 T in all reconstruction trees were in agreement and supported by the high bootstrap values ( Figures S2 and S3). Genus Fodinicola proposed by Carlsohn et al [11] is monophyletic and forms a distinct cluster with the genus Cryptosporangium [14] as a member of the family Cryptosporangiaceae [12] within the order Cryptosporangiales [13]. At the time of writing, this genus comprises only a single species, F. feengrottensis HKI 0501 T , which was isolated from acidic rocks of a medieval alum slate mine in Germany in 2008 [11].…”

Section: Phylogenetic Analysis Of 16s Rrna Genementioning

confidence: 99%

“…The genus Fodinicola was first proposed by Carlsohn et al [11] and is a member in the family Cryptosporangiaceae [12] within the order Cryptosporangiales [13]. Member of the genus only comprises a single species, Fodinicola feengrottensis HKI 0501 T , which was isolated from acidic metal-containing rocks of a medieval alum slate mine in Germany [11]. Generally, the species of this genus produce branched substrate mycelium and irregular rod-like fragmented aerial hyphae.…”

Section: Introductionmentioning

confidence: 99%

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Fodinicola acaciae sp. nov., an Endophytic Actinomycete Isolated from the Roots of Acacia mangium Willd. and Its Genome Analysis

et al. 2020

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A novel endophytic actinomycete strain GKU 173T isolated from the roots of Acacia mangium Willd. showed potential plant growth promoting (PGP) activity. Phylogenetic analysis, based on 16S rRNA gene, indicated that strain GKU 173T was the most closely related to Fodinicola feengrottensis HKI 0501T—the only species in the genus Fodinicola. Morphology and chemotaxonomy of strain GKU 173T indicated that it belongs to the genus Fodinicola by having meso-diaminopimelic acid in the cell wall and xylose as the characteristic cell-wall sugars. The cellular fatty acid profile mainly comprised iso-C16:0, anteiso-C17:0, iso-C18:0, and iso-C17:0. The major menaquinones were MK-9(H4), MK-9(H6), and MK-9(H8). The main polar phospholipids contained diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), and phosphatidylinositol (PI). Genome analysis signified DNA G+C content of 67.81 mol%. The level of digital DNA-DNA relatedness between strain GKU 173T and the type strain was 21.30%. On the basis of polyphasic characteristics, strain GKU 173T clearly represents a novel species of the genus Fodinicola, for which the name Fodinicola acaciae sp. nov. (= TBRC 10620T = NBRC 114213T) is proposed. Furthermore, genome analysis of both strains suggested that members of the genus Fodinicola are promising sources of beneficial PGP-actinomycetes and novel secondary metabolites.

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Section: Chemotaxonomic Analysismentioning

confidence: 85%

Section: Phylogenetic Analysis Of 16s Rrna Genementioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

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Fodinicola acaciae sp. nov., an Endophytic Actinomycete Isolated from the Roots of Acacia mangium Willd. and Its Genome Analysis

et al. 2020

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“…Members of this suborder have been isolated from various habitats such as rhizosphere, hot springs, activated sludge and geographically diverse soils (Carlsohn et al, 2008). They are involved in nitrogen fixation in association with non-leguminous plants…”

Section: Frankineaementioning

confidence: 99%

Taxonomy and ecology of antibiotic producing actinomycetes

Adegboye¹,

Babalola

2012

Afr. J. Agric. Res.

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The taxonomic and ecological positions of antibiotic producing actinomycetes are an integral part in antimicrobial agents' development program. Comprehensive understanding of the organisms give useful insight on the secondary metabolites been produced by them and other activities carried out by them in their habitat. Criteria for the identification of actinomycetes include morphological, physiological, ecological and molecular characterization. It is vital to identify the organism up to species level, since this will give an indication whether the antimicrobial agent being produced is novel or not. The suborder and habitat also act as pointers for possible secondary metabolites production and confer the need for further exploration.

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“…The suborder Frankineae Stackebrandt et al 1997 emend Zhi et al 2009 was recently emended by Lee (2013) and currently accommodates nine genera classified within seven families, Frankia Brunchorst 1886 (family Frankiaceae ), Acidothermus Mohagheghi et al 1986 ( Acidothermaceae ), Cryptosporangium Tamura et al 1998 ( Cryptosporangiaceae ), Blastococcus Ahrens and Moll 1970, Geodermatophilus Luedemann 1968, Modestobacter Mevs et al 2000 ( Geodermatophilaceae ), Motilibacter Lee 2012 ( Motilibacteraceae ) Nakamurella Tao et al 2004 ( Nakamurellaceae ) and Sporichthya Lechevalier et al 1968 ( Sporichthyaceae ), and two genera unassigned at the level of family, Fodinicola Carlsohn et al 2008 and Jatrophihabitans Madhaiyan et al 2013. The genera Humicoccus Yoon et al 2007 and Saxeibacter Lee et al 2008, which were previously members of the family Nakamurellaceae , were united into the genus Nakamurella (Kim et al , 2012a).…”

mentioning

confidence: 99%

Antricoccus suffuscus gen. nov., sp. nov., isolated from a natural cave

Lee

2015

International Journal of Systematic and Evolutionary Microbiology

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A novel actinobacterium, designated strain C4-31T, was isolated from soil collected from a cave. Cells were aerobic, Gram-reaction-positive, oxidase-negative, catalase-positive and non-motile cocci. Comparison of 16S rRNA gene sequences showed that the organism occupied a distinct phylogenetic position within the suborder Frankineae, with sequence similarity values of less than 93.2 % to members of this suborder. The diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. The major menaquinone was MK-9(H4). The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannoside, an unknown aminophospholipid and an unknown phospholipid. The major fatty acids were iso-C16 : 0, C17 : 1ω6c and C16 : 0. The G+C content of the DNA was 62.8 mol%. On the basis of morphological and chemotaxonomic data as well as phylogenetic evidence, strain C4-31T ( = KCTC 39556T = DSM 100065T) is considered to represent the type strain of a novel species of a new genus in the suborder Frankineae, for which the name Antricoccus suffuscus gen. nov., sp. nov. is proposed.

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Fodinicola feengrottensis gen. nov., sp. nov., an actinomycete isolated from a medieval mine

Cited by 27 publications

References 54 publications

Fodinicola acaciae sp. nov., an Endophytic Actinomycete Isolated from the Roots of Acacia mangium Willd. and Its Genome Analysis

Fodinicola acaciae sp. nov., an Endophytic Actinomycete Isolated from the Roots of Acacia mangium Willd. and Its Genome Analysis

Taxonomy and ecology of antibiotic producing actinomycetes

Antricoccus suffuscus gen. nov., sp. nov., isolated from a natural cave

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