Five novel species of the anamorphic genus Candida in the Cyberlindnera clade isolated from natural substrates in Taiwan

Chang, Chin‐Feng; Liu, Yiru; Chen, Shan-Fu; Наумов, Г. И.; Наумова, Е. С.; Lee, Ching-Fu

doi:10.1007/s10482-012-9708-0

Cited by 12 publications

(6 citation statements)

References 19 publications

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“…But Lindnera is a later homonym of a valid published plant genus, the genus Cyberlindnera was introduced as a replacement name for Lindnera , with 21 new combinations 42 . The Cyberlindnera clade contains 23 recognized teleomorphic species and 12 Candida species are also related to this clade 43 . The yeast Cyberlindner ajadinii , previously referred to as Pichia jadinii , Hansenul ajadinii or Candida guilliermondii , was reported to be the teleomorph of Candida utilis (also referred to as Torula yeast) 44 , which was used for almost one hundred years for various biotechnological applications 45 .…”

Section: Discussionmentioning

confidence: 99%

Fungal community succession and major components change during manufacturing process of Fu brick tea

Qin

Huang

et al. 2017

Sci Rep

104

109

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Fu brick tea is a unique post-fermented tea product which is fermented with microorganism during the manufacturing process. Metabolic analysis showed that most metabolites content were decreased during the manufacturing process of Fu brick tea, except GA (gallic acid). Illumina MiSeq sequencing of ITS gene amplicons was applied to analyze the fungal community succession. The genera Aspergillus, Cyberlindnera and Candida were predominant at the early stage of manufacturing process (from “primary dark tea” to “fermentation for 3 days”), but after the stage of “fermentation for 3 days” only Aspergillus was still dominated, and maintain a relatively constant until to the end of manufacturing process. The effects of metabolites on the structure of the fungal community were analyzed by redundancy analysis (RDA) and variation partitioning analysis (VPA). The results indicated that GCG (gallocatechin gallate), EGCG (epigallocatechin gallate) and GA as well as the interactions among them were the most probably ones to influence, or be influenced by the fungal communities during the fermentation process of Fu brick tea. This study revealed fungal succession, metabolite changes and their relationships, provided new insights into the mechanisms for manufacturing process of Fu brick tea.

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Section: Discussionmentioning

confidence: 99%

Fungal community succession and major components change during manufacturing process of Fu brick tea

Qin

Huang

et al. 2017

Sci Rep

104

109

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“…Classifications were curated manually for parsimony. While the fungal taxonomy is imperfect and in a state flux [45], [60]–[62], we note that in practice the Unifrac metric is relatively robust to the method used in creating phylogenetic trees [63]. Comprehensive data on OTU mean proportions and counts are in Tables S4–S7.…”

Section: Methodsmentioning

confidence: 99%

Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment

et al. 2013

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Antibiotic use in humans has been associated with outgrowth of fungi. Here we used a murine model to investigate the gut microbiome over 76 days of treatment with vancomycin, ampicillin, neomycin, and metronidazole and subsequent recovery. Mouse stool was studied as a surrogate for the microbiota of the lower gastrointestinal tract. The abundance of fungi and bacteria was measured using quantitative PCR, and the proportional composition of the communities quantified using 454/Roche pyrosequencing of rRNA gene tags. Prior to treatment, bacteria outnumbered fungi by >3 orders of magnitude. Upon antibiotic treatment, bacteria dropped in abundance >3 orders of magnitude, so that the predominant 16S sequences detected became transients derived from food. Upon cessation of treatment, bacterial communities mostly returned to their previous numbers and types after 8 weeks, though communities remained detectably different from untreated controls. Fungal communities varied substantially over time, even in the untreated controls. Separate cages within the same treatment group showed radical differences, but mice within a cage generally behaved similarly. Fungi increased ∼40-fold in abundance upon antibiotic treatment but declined back to their original abundance after cessation of treatment. At the last time point, Candida remained more abundant than prior to treatment. These data show that 1) gut fungal populations change radically during normal mouse husbandry, 2) fungi grow out in the gut upon suppression of bacterial communities with antibiotics, and 3) perturbations due to antibiotics persist long term in both the fungal and bacterial microbiota.

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“…The isolation of this novel species from diverse sources associated with lignocellulosic substrates in different regions of Brazil and also in the USA and Taiwan suggests that the lignocellulose and related materials could be its ecological niche. The close relatives of this novel yeast species – C. japonica , C. maesa and C. easanensis – have been isolated from frass samples collected in insect tunnels in fir trees, trees (fir and oak) and phylloplane (Kurtzman et al , 2011; Chang et al , 2012), suggesting an adaptation of these yeasts to these particular habitats.…”

Section: Species Delineation and Phylogenetic Placementmentioning

confidence: 99%

“…Since the last yeast taxonomic treatise (Kurtzman et al , 2011), novel species of Cyberlindnera have been described, such as Lindnera ( Cyberlindnera ) rhizosphaerae (Mestre et al , 2011), Lindnera ( Cyberlindnera ) wuzhiensis (Wang & Bai, 2010), C. samutprakarnensis (Poomtien et al , 2013) and C. xylebori (Ninomiya et al , 2013). Other species recently described as C. mengyuniae , C. adriatica , C. maesa , C. takata , C. taoyuanica , C. hungchunana and C. stauntonica also belong to the Cyberlindnera clade (Chen et al , 2009; Čadež et al , 2012; Chang et al , 2012). Despite the discovery of such an impressive number of novel species, the biotechnological properties of the majority of yeasts within the Cyberlindnera clade, with few exceptions, are still unknown.…”

mentioning

confidence: 99%

Cyberlindnera xylosilytica sp. nov., a xylitol-producing yeast species isolated from lignocellulosic materials

Cadete

Cheab

Santos

et al. 2015

International Journal of Systematic and Evolutionary Microbiology

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Independent surveys of yeasts associated with lignocellulosic-related materials led to the discovery of a novel yeast species belonging to the Cyberlindnera clade (Saccharomycotina, Ascomycota). Analysis of the sequences of the internal transcribed spacer (ITS) region and the D1/D2 domains of the large subunit rRNA gene showed that this species is related to C. japonica, C. maesa and C. easanensis. Six isolates were obtained from different sources, including rotting wood, tree bark and sugar cane filter cake in Brazil, frass from white oak in the USA and decayed leaf in Taiwan. A novel species is suggested to accommodate these isolates, for which the name C. xylosilytica sp. nov. is proposed. The type strain of C. xylosilytica sp. nov. is NRRL YB-2097T ( = CBS 13984T = UFMG-CM-Y347T) and the allotype is UFMG-CM-Y409 ( = CBS 14083). The novel species is heterothallic and complementary mating types are represented by the type and allotype strains. The MycoBank number is MB 811428.

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Five novel species of the anamorphic genus Candida in the Cyberlindnera clade isolated from natural substrates in Taiwan

Cited by 12 publications

References 19 publications

Fungal community succession and major components change during manufacturing process of Fu brick tea

Fungal community succession and major components change during manufacturing process of Fu brick tea

Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment

Cyberlindnera xylosilytica sp. nov., a xylitol-producing yeast species isolated from lignocellulosic materials

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