First microsatellite markers for<i>Scaligeria lazica</i>Boiss. (Apiaceae) by next-generation sequencing: population structure and genetic diversity analysis

Baldemir, Ayşe; Topçu, Hayat; Paksoy, Mehmet Yavuz; Motalebipour, Elmira Ziya; Kafkas, Salih

doi:10.1080/13102818.2017.1301784

Cited by 3 publications

(3 citation statements)

References 41 publications

(49 reference statements)

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“…This situation reflects the variation between the species. According to the cluster and population structure and genetic diversity analysis of S. lazica collected from different locations of Turkey, all accessions were grouped into four clusters based on the collection sites (Baldemir et al, 2017). Because of the striate rugulate ornamentation, size, and shape, S. capillifolia, S. glaucescens, S. hermonis, and S. lazica (A) conformed to the Bupleurum gilesii type of Perveen and Qaiser (2006).…”

Section: Discussionmentioning

confidence: 99%

Pollen morphology of Scaligeria DC. (Apiaceae) in Turkey

Baldemir¹,

Alan²,

Şahin³

et al. 2018

Turk J Bot

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Oedibasis are closely related and form a strongly supported clade. However, Scaligeria is not grouped with these genera (Degtjareva et al., 2009, 2013; Hand et al., 2012). This result is in agreement with the treatment suggested by Kljuykov et al. (1976) and Pimenov (1983). Meanwhile, the taxonomic issues of Scaligeria still remain unresolved and studies continue. Scaligeria is widespread, with its presence ranging from Turkey, Cyprus, the southwestern Balkan Peninsula, and Greece eastwards to Syria, Lebanon, Israel, and Jordan with 25 species (Kyriakopoulos et al., 2014). The genus is represented in Turkey by seven species: the endemic S. capillifolia Post. in Adana located in the south of Turkey; S. lazica Boiss., endemic to the Eastern Black Sea region; and S. glaucescens (DC.

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Section: Discussionmentioning

confidence: 99%

Pollen morphology of Scaligeria DC. (Apiaceae) in Turkey

Baldemir¹,

Alan²,

Şahin³

et al. 2018

Turk J Bot

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“…Species belonging to the Apiaceae family such as cumin, coriander, carrot, celery, and parsley are considered foods or spices; however, some of them contain highly toxic substances [ 13 ]. Niphogeton dissecta is a native herb of the Ecuadorian Andes found at 2500–4500 m above sea level [ 14 ], and is widely distributed in the provinces of Loja, Azuay, Cañar, Carchi, Chimborazo, Cotopaxi, Morona Santiago, Napo, Pichincha, and Zamora-Chinchipe.…”

Section: Introductionmentioning

confidence: 99%

Acorenone B: AChE and BChE Inhibitor as a Major Compound of the Essential Oil Distilled from the Ecuadorian Species Niphogeton dissecta (Benth.) J.F. Macbr

et al. 2017

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This study investigated the chemical composition, physical proprieties, biological activity, and enantiomeric analysis of the essential oil from the aerial parts of Niphogeton dissecta (culantrillo del cerro) from Ecuador, obtained by steam distillation. The qualitative and quantitative analysis of the essential oil was realized by gas chromatographic and spectroscopic techniques (GC-MS and GC-FID). Acorenone B was identified by GC-MS and NMR experiments. The enantiomeric distribution of some constituents has been assessed by enantio-GC through the use of a chiral cyclodextrin-based capillary column. We identified 41 components that accounted for 96.46% of the total analyzed, the major components were acorenone B (41.01%) and (E)-β-ocimene (29.64%). The enantiomeric ratio of (+)/(−)-β-pinene was 86.9:13.1, while the one of (+)/(−)-sabinene was 80.9:19.1. The essential oil showed a weak inhibitory activity, expressed as Minimal Inhibitory Concentration (MIC), against Enterococcus faecalis (MIC 10 mg/mL) and Staphylococcus aureus (MIC 5 mg/mL). Furthermore, it inhibited butyrylcholinesterase with an IC50 value of 11.5 μg/mL. Pure acorenone B showed inhibitory activity against both acetylcholinesterase and butyrylcholinesterase, with IC50 values of 40.8 μg/mL and 10.9 μg/mL, respectively.

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“…[ 84 ] and data mining from EST-databases in Centella asiatica [ 85 ]. Moreover, RNA-seq analyses were used for microsatellite development in Coriandrum sativum , Notopterygium incisum , Foeniculum vulgare , Oenanthe javanica , Apium graveolens , Angelica biserrata and Angelica dahurica [ 75 , 86 , 87 , 88 , 89 , 90 , 91 ]; whereas DNA-seq runs were performed with the same goal in Notopterygium oviforme , Anethum sowa , Cuminum cyminum , Scaligeria lazica , Foeniculum vulgare [ 46 , 92 , 93 , 94 , 95 ]. In Table 2 , we sum up what was described so far by reporting the main SSR-set developed in the Apiaceae family.…”

Section: Genomic and Transcriptomic Resources For Breeding Varieties And Phylogenetic Analysesmentioning

confidence: 99%

Impact of Genomic and Transcriptomic Resources on Apiaceae Crop Breeding Strategies

Palumbo

Vannozzi

Barcaccia

2021

IJMS

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The Apiaceae taxon is one of the most important families of flowering plants and includes thousands of species used for food, flavoring, fragrance, medical and industrial purposes. This study had the specific intent of reviewing the main genomics and transcriptomic data available for this family and their use for the constitution of new varieties. This was achieved starting from the description of the main reproductive systems and barriers, with particular reference to cytoplasmic (CMS) and nuclear (NMS) male sterility. We found that CMS and NMS systems have been discovered and successfully exploited for the development of varieties only in Foeniculum vulgare, Daucus carota, Apium graveolens and Pastinaca sativa; whereas, strategies to limit self-pollination have been poorly considered. Since the constitution of new varieties benefits from the synergistic use of marker-assisted breeding in combination with conventional breeding schemes, we also analyzed and discussed the available SNP and SSR marker datasets (20 species) and genomes (8 species). Furthermore, the RNA-seq studies aimed at elucidating key pathways in stress tolerance or biosynthesis of the metabolites of interest were limited and proportional to the economic weight of each species. Finally, by aligning 53 plastid genomes from as many species as possible, we demonstrated the precision offered by the super barcoding approach to reconstruct the phylogenetic relationships of Apiaceae species. Overall, despite the impressive size of this family, we documented an evident lack of molecular data, especially because genomic and transcriptomic resources are circumscribed to a small number of species. We believe that our contribution can help future studies aimed at developing molecular tools for boosting breeding programs in crop plants of the Apiaceae family.

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First microsatellite markers forScaligeria lazicaBoiss. (Apiaceae) by next-generation sequencing: population structure and genetic diversity analysis

Cited by 3 publications

References 41 publications

Pollen morphology of Scaligeria DC. (Apiaceae) in Turkey

Pollen morphology of Scaligeria DC. (Apiaceae) in Turkey

Acorenone B: AChE and BChE Inhibitor as a Major Compound of the Essential Oil Distilled from the Ecuadorian Species Niphogeton dissecta (Benth.) J.F. Macbr

Impact of Genomic and Transcriptomic Resources on Apiaceae Crop Breeding Strategies

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