We present a new approach for the analysis of water in nominally anhydrous minerals using transmission Raman spectroscopy. Using this approach, the laser was shone through thin, nearly transparent samples of clinopyroxene, garnet and synthetic rhyolite glass. To remove mineral-induced background and to improve the quality of the OH spectral region, specifically for clinopyroxene, a reference spectrum of a dehydrated crystal was measured and subtracted. Water contents of all clinopyroxene samples were previously determined by Fourier transformed infrared spectroscopy (FTIR). The application of transmission Raman spectroscopy and a reference spectrum of a dry sample revealed a noticeable improvement in the quality of spectra and thus the detection limit, compared to the standard backscattering configurations. We show that the quality of transmission spectra and the detection limit depend on the sample thickness, and that the thickness has to be taken into account when measuring and comparing OH-integrated intensity and water content if the results are used for OH quantification.