2016
DOI: 10.1016/j.jneumeth.2016.10.007
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Fast and robust segmentation of the striatum using deep convolutional neural networks

Abstract: h i g h l i g h t s• We describe a new method for stratium segmentation.• We employ two serial deep convolutional neural networks (CNN).• Segmentation accuracy of deep CNN is comparable with that of previous methods.• The processing time of the new method is much faster than previous methods. a r t i c l e i n f o a b s t r a c tBackground: Automated segmentation of brain structures is an important task in structural and functional image analysis. We developed a fast and accurate method for the striatum segme… Show more

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Cited by 64 publications
(41 citation statements)
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References 26 publications
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“…CNNs can take 2D or 3D images as input to train a model. They have been used in MRI for image reconstruction, tissue segmentation, tumor segmentation, and fMRI analysis (Choi & Jin, ; Jang, Plis, Calhoun, & Lee, ; Kamnitsas et al, ; Meszlenyi, Buza, & Vidnyanszky, ; Pham, Ducournau, Fablet, & Rousseau, ; Qin et al, ; Valverde et al, ). CNNs may be worth considering in future studies.…”
Section: Discussionmentioning
confidence: 99%
“…CNNs can take 2D or 3D images as input to train a model. They have been used in MRI for image reconstruction, tissue segmentation, tumor segmentation, and fMRI analysis (Choi & Jin, ; Jang, Plis, Calhoun, & Lee, ; Kamnitsas et al, ; Meszlenyi, Buza, & Vidnyanszky, ; Pham, Ducournau, Fablet, & Rousseau, ; Qin et al, ; Valverde et al, ). CNNs may be worth considering in future studies.…”
Section: Discussionmentioning
confidence: 99%
“…In domains like computer vision or natural language processing, deep neural networks have already dramatically improved state-of-the-art prediction performances (Goodfellow et al 2016;LeCun et al 2015). However, in the application of neuroimaging data analysis, a similar revolution has not materialized for most common prediction goals, despite considerable research effort and few successful exceptions, such as for the goal of image segmentation (Choi & Jin 2016;Kamnitsas et al 2017;Li et al 2018;Kather et al 2019) and image registration (Balakrishnan et al 2018;Yang et al 2017).…”
Section: Deep Learning Did Not Universally Improve Prediction Performmentioning
confidence: 99%
“…CNN können auch für die MRT-basierte Segmentierung einzelner Hirnstrukturen eingesetzt werden, z. B. Hippocampus [30] oder Striatum [31]. Die Rechenzeit liegt dabei im Bereich weniger Sekunden (im Vergleich zu mehreren Stunden mit bisherigen Standardmethoden wie FreeSurfer).…”
Section: Segmentierungunclassified
“…Die Rechenzeit liegt dabei im Bereich weniger Sekunden (im Vergleich zu mehreren Stunden mit bisherigen Standardmethoden wie FreeSurfer). Damit können diese Verfahren problemlos in der täglichen Routine eingesetzt werden [31]. Die Segmentierung einzelner Hirnstrukturen kann u. a. als Vorbereitung vollständig reproduzierbarer ROI-Auswertung von Hirn-SPECT oder -PET erfolgen.…”
Section: Segmentierungunclassified