of ATP supply to the current energy demand [Korzeniewski: Biochem J 330: 1189-1195, 1998 Korzeniewski: Biochem J 375: 799-804, 2003]. Because of this mechanism, not only ATP usage, but also the substrate dehydrogenation system and all oxidative phosphorylation complexes (complex I, complex III, complex IV, ATP synthase, ATP/ADP carrier, phosphate carrier) are directly (and not by changes in metabolite concentrations) activated by some intracellular factor(s) related to muscle contraction, probably by calcium ions, during the transition from rest to work. This mechanism is able to account for several kinetic properties of oxidative phosphorylation that cannot be explained by other mechanisms postulated in the literature. Thus the discussed kinetic model of oxidative phosphorylation has appeared to be a very useful research tool. [
Computer Model of Oxidative PhosphorylationOxidative phosphorylation in mitochondria is the main source of energy in the form of ATP in most muscles under most conditions. Therefore the quantitative description of the functioning and regulation of this system is crucial to our understanding of the bioenergetic aspect of muscle work. The basic scheme of the enzymatic reactions involved in the oxidative ATP production has been known since Mitchell proposed his chemiosmotic theory [1]; according to this theory the key intermediate in ATP synthesis is the so-called protonmotive force, that is the electrochemical potential associated with the proton gradient across the inner mitochondrial membrane. This thermodynamic potential constitutes the link between respiratory chain complexes, which couple electron flow from NADH to oxygen with proton pumping outside mitochondria (building up the protonmotive force) and ATP synthase, which couples proton return to mitochondrial matrix (dissipating the protonmotive force) with the synthesis of ATP from ADP and inorganic phosphate (P i ). The transport of