The cerebral cortex is parcellated into different functional domains that receive distinct inputs from other cortical and subcortical regions. The molecular mechanisms underlying the specificity of connections of cortical afferents remain unclear. We report here that the Eph family tyrosine kinase receptor EphA5 and the ligand ephrin-A5 may play a key role in the exclusion of the limbic thalamic afferents from the sensorimotor cortex by mediating repulsive interactions. In situ hybridization shows that the EphA5 transcript is expressed at high levels in both cortical and subcortical limbic regions, including the frontal cortex, the subiculum, and the medial thalamic nuclei. In contrast, ephrin-A5 is transcribed abundantly in the sensorimotor cortex. Consistent with the complementary expression, the ligand inhibited dramatically the growth of neurites from neurons isolated from the medial thalamus but was permissive for the growth of neurites from lateral thalamic neurons, which is primarily nonlimbic. Similarly, the growth of neurites from Eph-A5-expressing neurons isolated from the subiculum was inhibited by ephrin-A5. Our studies suggest that the Eph family ligand ephrin-A5 serves as a general inhibitor of axonal growth from limbic neurons, which may serve to prevent innervation of inappropriate primary sensorimotor regions, thus contributing to the generation of specificity of thalamic cortical afferents.The cerebral cortex is parcellated into multiple domains that subserve different functions (1-3). The medial cortical areas, which include prefrontal, cingulate, and retrosplenial cortices, are components of limbic circuits, in contrast to nonlimbic sensory and motor cortices (3, 4). The limbic cortices receive projections from nuclei in the medial and anterior thalamus and from other limbic areas, including the hippocampal formation (5). In contrast, the sensorimotor cortex is innervated specifically by primary sensory and motor thalamic nuclei located in the ventrolateral and posterior thalamus (5). This topographic arrangement of mature functional pathways in the adult brain is paralleled by an early specificity of thalamocortical projections during development (2, 6, 7). This specificity suggests the presence of guidance mechanisms that facilitate the formation of distinct projection patterns.In the classic model of topographic map formation, Sperry (8, 9) proposed that molecular tags form gradients in projecting and target fields and interact to guide axons to appropriate regions. Such guidance cues have been identified recently and have been shown to be receptors and ligands of the Eph family of tyrosine kinases (10-13). In the retinotectal topographic map, the Eph family receptor EphA3 is expressed by retinal ganglion neurons in a nasal (low) to temporal (high) gradient whereas two ligands, ephrin-A2 and -A5, are distributed in a complementary anterior (low) to posterior (high) gradient in the tectum (10, 14). In the hippocamposeptal projection, the Eph family receptor EphA5 is expressed in a l...