In this research a new way of express (real time) diagnostics of microbiocenosis and its disturbances is suggested. The express diagnostics of anaerobic infection allows to perform quick assessment of the injury microbiocenosis, the state of gastroenteric tract, the disbacteriosis presence and the deee of its development, to follow up dynamics of microflora variations in the process of medication treatment.The research were performed with optical PNC-method. The basic of the method is in registration of stimulated (secondary) radiations and registration of their space fields, which occur in the process of probing radiation interaction with biological tissues and their active elements. The process is called Photon-undulatory Nonlinear Conversion or in short PNC-process (PNC -method, PNC-diagnostic). [1][2][3].The optical diagnostic PNC-method developed here allows detecting the presence of anaerobic microflora directly at the bed of a patient. It makes possible to control the dynamic of patient rehabilitation process, providing strictly individual assessments.