Recently, DNA-assembly nanoparticles based on DNA-metal
ion interactions
are emerging as new building blocks for drug delivery and metal nanostructure
synthesis. However, the surface modification of DNA-assembly nanoparticles
using functional biomolecules that can identify specific targets has
rarely been explored. In this study, we developed a new immobilization
chemical strategy to efficiently functionalize the barcode DNA-assembly
nanoparticles (bcDNA NPs) with thiolated probe DNA (pDNA) for synthesizing
pDNA-functionalized bcDNA NPs (pDNA-bcDNA NPs). We used them as nanoprobes
to successfully demonstrate the sensitive and selective detection
of multiple DNA targets. Importantly, Au ions played an essential
role as anchoring sites via their conjugation with both thiolated
pDNA and bcDNA NPs. In addition, we could reversibly and rapidly disassemble
the pDNA-bcDNA NPs into the initial bcDNA strands with a recovery
rate of 91%; this process significantly amplified the signal by releasing
a million bcDNA strands, which enabled DNA quantification from a single
pDNA-bcDNA NP. The Au3+ concentration, pH, and surface
passivation conditions were carefully investigated to maximize the
pDNA loading to 8500 strands/bcDNA NP. The limit of detection was
determined to be 221 fM, which is the most sensitive among the absorbance-based
methods without polymerase chain reaction, hybridization chain reactions,
catalytic hairpin assembly, and other reactions involving enzymes
and catalysts. The reversible disassembly of DNA strands and Au ion-mediated
conjugation chemistry could be extended for the detection of other
types of targets, such as proteins, metal ions, and small molecules,
using other organic functionalities that are or can be thiolated,
including polypeptides, aptamers, and antibodies.