2017
DOI: 10.2903/sp.efsa.2017.en-1273
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Explanatory note on DNA sequence similarity searches in the context of the assessment of horizontal gene transfer from plants to microorganisms

Abstract: Guidance of the EFSA Panel on Genetically Modified Organisms assists applicants in the preparation and presentation of their applications by describing elements and data requirements for the risk assessment and monitoring of genetically modified (GM) plants. This note to the guidance provides a scientific rationale and further instructions for the use of bioinformatic analyses to identify GM plant sequences with sufficient identity to promote homologous recombination and impact on horizontal gene transfer from… Show more

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Cited by 67 publications
(46 citation statements)
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“…At the time of submission of the renewal dossier, the applicant provided a complete bioinformatic dataset for maize MON 88017 event including an analysis of the insert and flanking sequences, an analysis of the potential similarity to allergens and toxins of the newly expressed proteins and of all possible open reading frames (ORFs) within the insert and spanning the junction sites, an analysis of possible horizontal gene transfer (EFSA, 2017b), and a safety assessment of the newly expressed proteins Cry3Bb1 and CP4 EPSPS regarding their capacity to trigger celiac disease (EFSA GMO Panel, 2017a). Upon EFSA request, the applicant provided additional information followed by further clarifications on the celiac disease analysis for Cry3Bb1 protein.…”
Section: Data and Methodologiesmentioning
confidence: 99%
“…At the time of submission of the renewal dossier, the applicant provided a complete bioinformatic dataset for maize MON 88017 event including an analysis of the insert and flanking sequences, an analysis of the potential similarity to allergens and toxins of the newly expressed proteins and of all possible open reading frames (ORFs) within the insert and spanning the junction sites, an analysis of possible horizontal gene transfer (EFSA, 2017b), and a safety assessment of the newly expressed proteins Cry3Bb1 and CP4 EPSPS regarding their capacity to trigger celiac disease (EFSA GMO Panel, 2017a). Upon EFSA request, the applicant provided additional information followed by further clarifications on the celiac disease analysis for Cry3Bb1 protein.…”
Section: Data and Methodologiesmentioning
confidence: 99%
“…The GMO Panel conducted its assessment in line with the principles described in Regulation (EU) No 503/2013, its applicable guidelines (i.e., EFSA GMO Panel, ,b, ,b, ) and explanatory notes (i.e. EFSA, ,b) for the risk assessment of GM plants. During its risk assessment the GMO Panel considered all additional unpublished studies as listed in Appendix B for potential effects of the GM food and feed on human and animal health and the environment.…”
Section: Data and Methodologiesmentioning
confidence: 99%
“…Increases up to 8% in manganese and up to 11% in magnesium were observed in the GM maize as compared to its non‐GM comparator. These two minerals are essential elements for humans and Adequate Intakes (AI) have been proposed (EFSA, ,b). While no Tolerable Upper Intake Levels (UL) are set for manganese, for magnesium the UL refer to dissociable Mg salts (e.g.…”
Section: Assessmentmentioning
confidence: 99%