We have developed a microfluidic mixer for studying protein folding and other reactions with a mixing time of 8 μs and sample consumption of femtomoles. This device enables us to access conformational changes under conditions far from equilibrium and at previously inaccessible time scales. In this paper, we discuss the design and optimization of the mixer using modeling of convective diffusion phenomena and a characterization of the mixer performance using microparticle image velocimetry, dye quenching, and Förster resonance energy-transfer (FRET) measurements of single-stranded DNA. We also demonstrate the feasibility of measuring fast protein folding kinetics using FRET with acyl-CoA binding protein.In protein folding, important structural events occur on a microsecond time scale. 1 To study their kinetics, folding reactions must be initiated at even shorter time scales. Photochemical initiation 2 and changes in temperature, 3 pressure, 4,5 or chemical potential, as in salt or chemical denaturant concentration changes, 6-9 all provide the perturbation of protein conformational equilibria necessary to initiate folding. Laser temperature-jump relaxation provides the best temporal resolution with dead times in the nanosecond range, 3 but only a small number of proteins denature reversibly at elevated temperature. Temperature-jump techniques are also limited to conditions near the equilibrium unfolding transition where marginally stable folding intermediates are less likely to accumulate. Pressure relaxation initiates the folding process by exploiting a change in the volume between the folded and unfolded conformers. Pressure changes up to 20 MPa in under 100 μs have been created with piezoelectric devices to monitor rate-limiting barrier crossing in the cold shock protein with Förster resonance energy transfer (FRET). 10 However, in pressure-jump experiments, the folding equilibrium is shifted only marginally at low denaturant concentrations where collapse occurs, and chain collapse is therefore not easily measured via FRET as refolding amplitudes are small. 10-12In comparison to temperature-and pressure-jump relaxation techniques, folding experiments based on changes in chemical potential, via rapid mixing of protein solutions in to and out of chaotrope solvents, are more versatile. The technique is applicable to a wide range of proteins as most unfold reversibly in the presence of chemical denaturants such as urea 7 and guanidine hydrochloride (GdCl). 6 Further, mixer-based experiments are not limited to proteins near the folding transition state. Until recently, the main limitation of mixer-based experiments was