We evaluated a multiplexed PCR panel for the detection of 16 bacterial, viral, and fungal pathogens in cerebrospinal fluid. Panel results were compared to routine testing, and discrepancies were resolved by additional nucleic acid amplification tests or sequencing. Overall, the positive and negative agreements across methods were 92.9% and 91.9%, respectively. A cute meningoencephalitis (ME) is an inflammatory disease of the central nervous system (CNS) that can result in significant morbidity and mortality. Prompt diagnosis is essential for optimal outcomes (1-3) and resource utilization (4), but confirming an infectious etiology is often difficult and time-consuming. Culture remains the diagnostic gold standard for the diagnosis of bacterial and fungal ME, while nucleic acid (NA) amplification using PCR is used routinely for viruses.BioFire Diagnostics (Salt Lake City, UT) has developed a fully automated, multiplexed PCR system called the FilmArray (FA) that can test for large combinations of infectious agents simultaneously. A FilmArray ME panel was designed to detect and identify 16 common bacteria, viruses, and yeasts directly from cerebrospinal fluid (CSF). The purpose of this study was to evaluate the test performance of a research only (RUO) version of the panel ( Table 1) compared to that of conventional microbiologic testing.(Portions of the this study were previously presented at the American Society for Microbiology Meeting, Boston, MA, 17 to 20 May 2014, and at the Infectious Diseases Society of America Meeting, Philadelphia, PA, 8 to 12 October 2014.) CSF samples obtained by lumbar puncture between August 2012 and March 2014 were retrieved from frozen storage (Ϫ20°C) at the University of Utah's ARUP Laboratories and Primary Children's Hospital (Salt Lake City, UT). Specimens were eligible to be included in the study if (i) they had been previously analyzed with at least one conventional method (bacterial culture, viral PCR, and/or cryptococcal antigen [CrAG]) and (ii) there was an adequate residual volume for FA ME testing and discrepancy resolution testing if necessary. Only the first CSF specimen submitted with adequate volume per patient was included in the study repository. Specimens were linked to the routine microbiology results and then deidentified prior to FA ME testing.FA ME testing was performed by investigators blinded to the conventional test results. The RUO multiplex panel was used per the manufacturer's instructions. Briefly, 200 l of CSF was diluted 1:4 with sample buffer and was injected into a single-use FA ME pouch. Testing was performed on the commercially available FA instrument with RUO software. NA extraction, purification, amplification, and results interpretations are automated within the FA system. Assay run time was approximately 1 h with 5 min of hands-on work.ARUP Laboratories-developed real-time PCR tests (LDTs) (5-9) were used to resolve specimens with viral NA detected by FA ME testing that had not been previously tested by PCR as a part of routine clinical care. ...