Erythrobacter longus gen. nov., sp. nov., an Aerobic Bacterium Which Contains Bacteriochlorophyll a

Shiba, Tsuneo; Simidu, Usio

doi:10.1099/00207713-32-2-211

Cited by 182 publications

(170 citation statements)

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“…Table 1. Phenotypic characteristics that differentiate strain E4A9 T from other related members of the family Erythrobacteraceae Strains/taxa: 1, strain E4A9 T ; 2, Altererythrobacter (Yoon et al, 2005b;Kwon et al, 2007); 3, Erythrobacter (Shiba & Simidu, 1982;Yurkov et al, 1994;Denner et al, 2002;Yoon et al, 2003Yoon et al, , 2004aYoon et al, , 2005aIvanova et al, 2005); 4, Erythromicrobium (Yurkov et al, 1994;Rainey et al, 2003); 5, Porphyrobacter (Fuerst et al, 1993;Hanada et al, 1997;Hiraishi et al, 2002;Rainey et al, 2003;Yoon et al, 2004bYoon et al, , 2006. Data refer to all species within the genera.…”

Section: Description Of Croceicoccus Marinus Sp Novmentioning

confidence: 99%

“…On the basis of phenotypic and genotypic data presented in this study, strain E4A9 T represents a novel species in a new genus in the family Erythrobacteraceae for which the name Croceicoccus marinus gen. nov., sp. nov. is proposed; the type strain is E4A9 T (5CGMCC 1.6776 T 5JCM 14846 T ).The family Erythrobacteraceae (order Sphingomonadales, class Alphaproteobacteria) was proposed by Lee et al (2005) based on a comprehensive phylogenetic analysis and, at present, it comprises four recognized genera: Altererythrobacter (Kwon et al, 2007), Erythrobacter (Shiba & Simidu, 1982), Erythromicrobium (Yurkov et al, 1994) and Porphyrobacter (Fuerst et al, 1993).Members of the family Erythrobacteraceae are aerobic and produce pink, orange or yellow pigments. Ubiquinone-10 is the major respiratory quinone.…”

mentioning

confidence: 99%

“…Ubiquinone-10 is the major respiratory quinone. Most species in the family have been isolated from various aquatic environments such as freshwater, seawater, marine mats or sediment, a hot spring, seaweed, a starfish and coral (Shiba & Simidu, 1982; Fuerst et al, 1993;Yurkov et al, 1994; Hanada et al, 1997; Denner et al, 2002; Hiraishi et al, 2002;Rainey et al, 2003;Yoon et al, 2003Yoon et al, , 2004a Yoon et al, , b, 2005a Yoon et al, , b, 2006Ivanova et al, 2005;Kwon et al, 2007). This study focuses on the description of strain E4A9 T , isolated from a deep-sea sediment sample.…”

mentioning

confidence: 99%

“…The family Erythrobacteraceae (order Sphingomonadales, class Alphaproteobacteria) was proposed by Lee et al (2005) based on a comprehensive phylogenetic analysis and, at present, it comprises four recognized genera: Altererythrobacter (Kwon et al, 2007), Erythrobacter (Shiba & Simidu, 1982), Erythromicrobium (Yurkov et al, 1994) and Porphyrobacter (Fuerst et al, 1993).…”

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Croceicoccus marinus gen. nov., sp. nov., a yellow-pigmented bacterium from deep-sea sediment, and emended description of the family Erythrobacteraceae

Wang

et al. 2009

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLO

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Croceicoccus marinus gen. nov., sp. nov., a yellow-pigmented bacterium from deep-sea sediment, and emended description of the family Erythrobacteraceae A Gram-negative, aerobic, neutrophilic, coccoid bacterium, strain E4A9 T , was isolated from a deep-sea sediment sample collected from the East Pacific polymetallic nodule region. 16S rRNA gene sequence analysis showed that the isolate was related to the type strain of Altererythrobacter epoxidivorans (96.0 % sequence similarity). Lower 16S rRNA gene sequence similarities were observed with other members of the genera Altererythrobacter (94.7 %), Erythrobacter (94.0-95.4 %), Erythromicrobium (94.8 %) and Porphyrobacter (94.6-95.1 %) of the family Erythrobacteraceae. Phylogenetic analysis including all described species of the family Erythrobacteraceae and several members of the family Sphingomonadaceae revealed that the isolate formed a distinct phylogenetic lineage with the family Erythrobacteraceae. Chemotaxonomic analysis revealed ubiquinone-10 as the predominant respiratory quinone, anteiso-C 15 : 0 , iso-C 14 : 0 and iso-C 15 : 0 as major fatty acids, and phosphatidylglycerol as the major polar lipid. The DNA G+C content was 71.5 mol%. The isolate contained carotenoids, but no bacteriochlorophyll a. On the basis of phenotypic and genotypic data presented in this study, strain E4A9 T represents a novel species in a new genus in the family Erythrobacteraceae for which the name Croceicoccus marinus gen. nov., sp. nov. is proposed; the type strain is E4A9 T (5CGMCC 1.6776 T 5JCM 14846 T ).The family Erythrobacteraceae (order Sphingomonadales, class Alphaproteobacteria) was proposed by Lee et al. (2005) based on a comprehensive phylogenetic analysis and, at present, it comprises four recognized genera: Altererythrobacter (Kwon et al., 2007), Erythrobacter (Shiba & Simidu, 1982), Erythromicrobium (Yurkov et al., 1994) and Porphyrobacter (Fuerst et al., 1993).Members of the family Erythrobacteraceae are aerobic and produce pink, orange or yellow pigments. Ubiquinone-10 is the major respiratory quinone. Most species in the family have been isolated from various aquatic environments such as freshwater, seawater, marine mats or sediment, a hot spring, seaweed, a starfish and coral (Shiba & Simidu, 1982; Fuerst et al., 1993;Yurkov et al., 1994; Hanada et al., 1997; Denner et al., 2002; Hiraishi et al., 2002;Rainey et al., 2003;Yoon et al., 2003Yoon et al., , 2004a Yoon et al., , b, 2005a Yoon et al., , b, 2006Ivanova et al., 2005;Kwon et al., 2007). This study focuses on the description of strain E4A9 T , isolated from a deep-sea sediment sample. Based on the taxonomic data, it is proposed that this strain be included in a new genus within the family Erythrobacteraceae.The deep-sea sediment samples were collected by a multicorer from the East Pacific polymetallic nodule region (8 u 229 380 N 145 u 239 560 W) at a depth of Abbreviation: BChl a, bacteriochlorophyll a.The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain E4A9 T is EF62399...

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Section: Description Of Croceicoccus Marinus Sp Novmentioning

confidence: 99%

mentioning

confidence: 99%

mentioning

confidence: 99%

mentioning

confidence: 99%

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Croceicoccus marinus gen. nov., sp. nov., a yellow-pigmented bacterium from deep-sea sediment, and emended description of the family Erythrobacteraceae

Wang

et al. 2009

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLO

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“…The genus Erythrobacter was proposed by Shiba & Simidu (1982) to accommodate Gram-negative, ovoid to rodshaped and aerobic chemo-organotrophs. Species of this genus are red or orange in colour and contain bacteriochlorophyll a and carotenoids (Shiba & Simidu, 1982;Yurkov et al, 1994).…”

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Erythrobacter flavus sp. nov., a slight halophile from the East Sea in Korea

Yoon

Kim

et al. 2003

International Journal of Systematic and Evolutionary Microbiology

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Two Gram-negative, motile, non-spore-forming, yellow-pigmented and slightly halophilic strains (SW-46 T and SW-52) were isolated from sea water of the East Sea, Korea, and subjected to a polyphasic taxonomic study. Strains SW-46 T and SW-52 were characterized chemotaxonomically by having ubiquinone-10 (Q-10) as the predominant respiratory lipoquinone and C 18 : 1 v7c as the major fatty acid. Their DNA G+C content was 64?0-64?1 mol%. Strains SW-46 T and SW-52 showed 1 bp difference in their 16S rDNA sequences and a mean DNA-DNA relatedness level of 94?4 %. Phylogenetic analysis based on 16S rDNA sequences showed that strains SW-46 T and SW-52 fall within the a-subclass of the Proteobacteria and form a coherent cluster with Erythrobacter longus, Erythrobacter litoralis and Erythrobacter citreus. Levels of 16S rDNA similarity between strains SW-46 T and SW-52 and the type strains of these three Erythrobacter species were 96?5-97?9 %. Levels of DNA-DNA relatedness between strains SW-46 T and SW-52 and the type strains of E. longus, E. litoralis and E. citreus were 3?6-14?7 %. Therefore, on the basis of phenotypic properties, phylogeny and genomic data, strains SW-46 T and SW-52 should be placed in the genus Erythrobacter as a novel species, for which the name Erythrobacter flavus sp. nov. is proposed. The type strain is SW-46 T (=KCCM 41642 T =JCM 11808 T ).

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Erythrobacteraceae

Xu,

Zhang

2023

Bergey's Manual of Systematics of Archaea and Bacteria

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E.ry.thro.bac.te.ra'ceae. N.L. masc. n. Erythrobacter , type genus of the family; L. fem. pl. n. suff. ‐ aceae , ending to denote a family; N.L. fem. pl. n. Erythrobacteraceae , the Erythrobacter family. Pseudomonadota / Alphaproteobacteria / Sphingomonadales / Erythrobacteraceae Cells are Gram‐stain‐negative rods, cocci, or ellipsoids. Several species are motile. Aerobic or facultatively anaerobic. The dominant respiratory quinone is ubiquinone‐10 (Q‐10). The major polar lipids are phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and glycosphingolipid (SGL). The cellular fatty acid profiles are dominated by unsaturated fatty acids including heptadecenoic acid (C 17 : 1 ) and octadecenoic acid (C 18 : 1 ). The family forms a monophyletic cluster in neighbor‐joining phylogenetic analyses of the 16S rRNA gene, while its genus discriminations are based on phylogenomic and genomic similarity analysis. It currently accommodates 19 genera. Members of the family Erythrobacteraceae were isolated from various habitats, including marine, terrestrial and freshwater environments. DNA G + C content (mol%) : 54–74 (by genome, HPLC or T m ). Type genus : Erythrobacter Shiba and Simidu 1982 VP .

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Erythrobacter longus gen. nov., sp. nov., an Aerobic Bacterium Which Contains Bacteriochlorophyll a

Cited by 182 publications

References 4 publications

Croceicoccus marinus gen. nov., sp. nov., a yellow-pigmented bacterium from deep-sea sediment, and emended description of the family Erythrobacteraceae

Croceicoccus marinus gen. nov., sp. nov., a yellow-pigmented bacterium from deep-sea sediment, and emended description of the family Erythrobacteraceae

Erythrobacter flavus sp. nov., a slight halophile from the East Sea in Korea

Erythrobacteraceae

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