Residual hepatitis B virus (HBV) DNA can be detected in serum and liver after apparent recovery from transient infection. However, it is not known if this residual HBV DNA represents ongoing viral replication and antigen expression. In the current study, ducks inoculated with duck hepatitis B virus (DHBV) were monitored for residual DHBV DNA following recovery from transient infection until 9 months postinoculation (p.i.). Resolution of DHBV infection occurred in 13 out of 15 ducks by 1-month p.i., defined as clearance of DHBV surface antigen-positive hepatocytes from the liver and development of anti-DHBV surface antibodies. At 9 months p.i., residual DHBV DNA was detected using nested PCR in 10/11 liver, 7/11 spleen, 2/11 kidney, 1/11 heart, and 1/11 adrenal samples. Residual DHBV DNA was not detected in serum or peripheral blood mononuclear cells. Within the liver, levels of residual DHBV DNA were 0.0024 to 0.016 copies per cell, 40 to 80% of which were identified as covalently closed circular viral DNA by quantitative PCR assay. This result, which was confirmed by Southern blot hybridization, is consistent with suppressed viral replication or inactive infection. Samples of liver and spleen cells from recovered animals did not transmit DHBV infection when inoculated into 1-to 2-day-old ducklings, and immunosuppressive treatment of ducks with cyclosporine and dexamethasone for 4 weeks did not alter levels of residual DHBV DNA in the liver. These findings further characterize a second form of hepadnavirus persistence in a suppressed or inactive state, quite distinct from the classical chronic carrier state.Hepatitis B virus (HBV) infections in adult humans are typically characterized by recovery and the development of anti-surface antibodies (anti-HBs) and immunity to reinfection. Despite the apparent clearance of HBV infection, a number of studies of patient sera have demonstrated persistence of viral DNA for months or years after resolution of transient HBV infection (2,19,24,41). Cytotoxic T-lymphocyte responses also persist, and reactivation of infection can occur following immunosuppression or after liver transplantation (5,6,16,17,38).Yotsuyanagi et al. found traces of residual HBV DNA in sera collected from 10 out of 11 patients up to 19 months after the diagnosis of transient HBV infection (41). Michalak et al. reported residual HBV DNA in the serum and peripheral blood mononuclear cells (PBMC) collected from four out of five patients up to 70 months after the resolution of HBV infection (24). Ultracentrifugation and PCR were used to determine that the viral DNA-positive fraction in serum sedimented at the same rate as HBV virions, suggesting that the residual HBV DNA was present within viral particles (24). In another study, evidence for HBV closed circular viral DNA (cccDNA) in the liver almost 4 years after resolution of HBV infection was obtained using PCR techniques (20). However, this result is not totally unambiguous inasmuch as HBV DNA may integrate into host DNA during infection and integrated ...