Cellular homeostasis in response to internal and external stimuli requires a tightly coordinated interorgannellar communication network. We recently identified methylerythritol cyclodiphosphate (MEcPP) as a novel stress-specific retrograde signaling metabolite that accumulates in response to environmental perturbations to relay information from plastids to the nucleus. We now demonstrate, using a combination of transcriptome and proteome profiling approaches, that mutant plants (ceh1) with high endogenous levels of MEcPP display increased transcript and protein levels for a subset of the core unfolded protein response (UPR) genes. The UPR is an adaptive cellular response conserved throughout eukaryotes to stress conditions that perturb the endoplasmic reticulum (ER) homeostasis. Our results suggest that MEcPP directly triggers the UPR. Exogenous treatment with MEcPP induces the rapid and transient induction of both the unspliced and spliced forms of the UPR gene bZIP60. Moreover, compared with the parent background (P), ceh1 mutants are less sensitive to the ER-stress-inducing agent tunicamycin (Tm). P and ceh1 plants treated with Tm display similar UPR transcript profiles, suggesting that although MEcPP accumulation causes partial induction of selected UPR genes, full induction is triggered by accumulation of misfolded proteins. This finding refines our perspective of interorgannellar communication by providing a link between a plastidial retrograde signaling molecule and its targeted ensemble of UPR components in ER.T he endoplasmic reticulum (ER) function is crucial to adjustment and maintenance of a balance between protein loads and folding capacity in response to frequently changing intracellular and environmental conditions. To maintain balance (homeostasis) under stressful conditions, the ER activates conserved intracellular signal transduction pathways collectively termed the unfolded protein response (UPR) (1). The UPR monitors ER protein-folding capacity and communicates the ER status to gene expression programs that up-regulate genes encoding components of the protein folding machinery or the ER-associated degradation system (1, 2). In plants, two distinct and parallel branches of the UPR signaling pathway have been identified. One pathway involves two integral membrane-bound transcription factors (bZIP17 and bZIP28). The other pathway involves an ER membrane-localized dual-functioning (kinase/ribonuclease) protein, inositol-requiring protein-1 (IRE1). IRE1 catalyzes unconventional cytoplasmic splicing of mRNA encoding basic leucine zipper 60 (bZIP60), the transcription factor responsible for the induction of ER quality control genes (3, 4). Stress causes activation and nuclear relocation of bZIP17 and bZIP28, and activation of IRE1 responsible for splicing of bZIP60 mRNA that encodes transcriptionally active nuclear localized bZIP60. These activated transcription factors induce transcription of target genes, including genes that mediate the UPR.Protein folding is coupled to many biological processes,...