Abstract:Current pharmacologic treatments for inflammatory diseases are largely palliative rather than curative. Most of them result in nonspecific immunosuppression. This can be associated with disruption of natural and induced immunity with significant, sometimes dramatic, adverse effects. Among the novel strategies that are under development, tools that target specific molecular pathways and cells, and more precisely modulate the immune system to restore normal tolerance mechanisms are central. In these approaches, … Show more
“…Despite promising results in mouse models, antigen-specific immunotherapy has not yet been very successful. A few on-going clinical trials only hold promise and might represent future roads for immunotherapy in autoimmune diseases [330].…”
Section: Novel Roads For Immunotherapy Of Autoimmune Diseasesmentioning
confidence: 99%
“…Peptide analogues and notably altered peptide ligands that have the capacity to deviate the signal transduction events following their interaction with the T cell-receptor were designed, and some of them were found to partially restore the normal immune response in mouse models (for a recent review see [330]). Promising results were obtained with ATX-MS-1467, a preparation made of a mixture of four soluble MBP peptides tested in an open phase I/IIa clinical trial involving patients with MS (Apitope Technology Ltd, Bristol, UK).…”
“…Despite promising results in mouse models, antigen-specific immunotherapy has not yet been very successful. A few on-going clinical trials only hold promise and might represent future roads for immunotherapy in autoimmune diseases [330].…”
Section: Novel Roads For Immunotherapy Of Autoimmune Diseasesmentioning
confidence: 99%
“…Peptide analogues and notably altered peptide ligands that have the capacity to deviate the signal transduction events following their interaction with the T cell-receptor were designed, and some of them were found to partially restore the normal immune response in mouse models (for a recent review see [330]). Promising results were obtained with ATX-MS-1467, a preparation made of a mixture of four soluble MBP peptides tested in an open phase I/IIa clinical trial involving patients with MS (Apitope Technology Ltd, Bristol, UK).…”
“…We and others recently reviewed the numerous advantages of peptide‐based approaches in treating lupus and other autoimmune diseases . There is a notable increased interest in peptides over other types of drug candidates such as therapeutic fusion proteins or monoclonal antibodies .…”
Section: Introductionmentioning
confidence: 99%
“…There are, however, various ways to circumvent these liabilities, by modifying either side chain residues or the polypeptide backbone. Such changes can efficiently minimize some of the intrinsic difficulties of peptides …”
Nanoscale materials hold great promise in the therapeutic field. In particular, as carriers or vectors, they help bioactive molecules reach their primary targets. Furthermore, by themselves, certain nanomaterials-regarded as protective-can modulate particular metabolic pathways that are deregulated in pathological situations. They can also synergistically improve the effects of a payload drug. These properties are the basis of their appeal. However, nanoscale materials can also have intrinsic properties that limit their use, and this is the case for certain types of nanomaterials that influence autophagy. This property can be beneficial in some pathological settings, but in others, if the autophagic flux is already accelerated, it can be deleterious. This is notably the case for systemic lupus erythematosus (SLE) and other chronic inflammatory diseases, including certain neurological diseases. The nanomaterial-autophagy interaction therefore must be treated with caution for therapeutic molecules and peptides that require vectorization for their administration.
“…Recently, there have been exciting developments in peptide science, and commercial interest in peptides is growing, especially as novel pharmaceutical agents (1)(2)(3). Computational methods, like docking and virtual screening, can be used to facilitate peptide drug discovery (4).…”
Peptides hold great promise as novel medicinal and biologic agents, and computational methods can help unlock that promise. In particular, structure-based peptide design can be used to identify and optimize peptide ligands. Successful structure-based design, in turn, requires accurate and fast methods for predicting protein-peptide binding affinities. Here, we review the development of such methods, emphasizing structure-based methods that assume rigid-body association and the single-structure approximation. We also briefly review recent applications of computational free energy prediction methods to enable and guide novel peptide drug and biomarker discovery. We close the review with a brief perspective on the future of computational, structure-based protein-peptide binding affinity prediction.
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