The tsetse thrombin inhibitor, a potent and specific low molecular mass (3,530 Da) anticoagulant peptide, was purified previously from salivary gland extracts of Glossina morsitans morsitans (Diptera: Glossinidae). A 303-bp coding sequence corresponding to the inhibitor has now been isolated from a tsetse salivary gland cDNA library by using degenerate oligonucleotide probes. The full-length cDNA contains a 26-bp untranslated segment at its 5 end, followed by a 63-bp sequence corresponding to a putative secretory signal peptide. A 96-bp segment codes for the mature tsetse thrombin inhibitor, whose predicted molecular weight matches that of the purified native protein. Based on its lack of homology to any previously described family of molecules, the tsetse thrombin inhibitor appears to represent a unique class of naturally occurring protease inhibitors. Recombinant tsetse thrombin inhibitor expressed in Escherichia coli and the chemically synthesized peptide are both substantially less active than the purified native protein, suggesting that posttranslational modification(s) may be necessary for optimal inhibitory activity. The tsetse thrombin inhibitor gene, which is present as a single copy in the tsetse genome, is expressed at high levels in salivary glands and midguts of adult tsetse flies, suggesting a possible role for the anticoagulant in both feeding and processing of the bloodmeal.The saliva of hematophagous invertebrates contains a diverse array of potent antithrombotic molecules, including anticoagulants, vasodilators, and inhibitors of platelet function (1-3). In the case of certain ''pool-feeding'' insects, particularly biting flies, these antihemostatic agents are thought to facilitate the rapid formation of a subcutaneous hematoma, from which the insect can suck blood efficiently. By inhibiting the critical steps through which the mammalian thrombotic response limits blood loss at the site of tissue damage, these insects are able to feed quickly, often requiring only seconds to complete their meal. It is during feeding that many of these arthropods also transmit important infectious pathogens, including protozoa, nematodes, and viruses, which are injected into or deposited on the skin as the insect probes for blood (4, 5).Tsetse flies (Diptera: Glossinidae) are the invertebrate hosts of African trypanosomes, protozoan parasites that cause sleeping sickness in humans and related diseases in cattle. These bloodfeeding insects have been known for decades to produce a potent salivary anticoagulant (6). First characterized as an ''antikinase'' (7), this activity was ultimately identified as an inhibitor of thrombin (8,9). Recently, the tsetse thrombin inhibitor (TTI), a potent (K i * ϭ 584 fM) 32-aa peptide, was purified to homogeneity from salivary gland extracts of Glossina morsitans morsitans (10). This inhibitor is highly specific for thrombin, showing no activity against a panel of 10 serine proteases, including components of the human coagulation͞thrombolytic cascade, as well as trypsin a...