SUMMARYResidual effects, in other words, deviations from normal behaviour patterns after initial responses, were decreased courtship behaviour for up to 1.5 h after, and increased agonistic behaviour for up to 2 h after military jet over-flights. Direct behavioural responses to military jet over-flights were of short duration (generally <1 min), and were unlikely to affect critical behaviours such as feeding and resting in the overall time-activity budgets of breeding pairs. However, the presence of residual effects on behaviour implied whole-body stress responses that were potentially more serious; these require further study because they are potentially more detrimental than immediate responses, and may not be detected in studies that focus on readily observed overt responses. A dose-response curve relating particular behaviours of harlequin ducks to associated noise of over-flights could be a valuable conservation tool for the research and mitigation of environmental impacts of aircraft and other noise.