Nitros(yl)ation is a widespread protein modification that occurs during many physiological and pathological processes. It can alter both the activity and function of a protein. Nitric oxide ( ⅐ NO) has been implicated in this process, but its mechanism remained uncertain. ⅐ NO is unable to react with nucleophiles under oxygenfree conditions, suggesting that its higher oxides, such as N 2O3, were actually nitrosylating agents. However, low concentrations and short lifespans of these species in vivo raise the question of how they could efficiently locate target proteins. Here we demonstrate that at physiological concentrations of ⅐ NO, N2O3 forms inside protein-hydrophobic cores and causes nitrosylation within the protein interior. This mechanism of protein modification has not been characterized, because all previously described mechanisms (e.g., phosphorylation, acetylation, ADP-ribosylation, etc.) occur via attack on a protein by an external modification agent. Oxidation of ⅐ NO to N2O3 is facilitated by micellar catalysis, which is mediated by the hydrophobic phase of proteins. Thus, a target protein seems to be a catalyst of its own nitrosylation. One of the applications of this finding, as we report here, is the design of specific hydrophobic compounds whose cooperation with ⅐ NO and O 2 allows the rapid inactivation of target enzymes to occur. T he free radical ⅐ NO has important biological functions including vasorelaxation, blood clotting, neuronal plasticity, and cytotoxic activity (for reviews, see refs. 1 and 2). In many cases, the physiological effect of ⅐ NO can be attributed to the S-nitrosylation of target proteins such as hemoglobin (3), serum albumin (4 and 5), transcription factors (6-9), G proteins (10), ion channels (11), and various enzymes (12)(13)(14). Excessive protein nitrosation has been associated also with various pathological situations including myocardial ischemia, atherosclerosis, inflammation, and cancer (for reviews, see refs. 1, 2, 15, and 16). In vivo, nitros(yl)ation can be mediated by dinitrogen trioxide (N 2 O 3 ; refs. 15 and 17-19 and references therein), ⅐ NO carriers such as nitrosothiols refs. 15,17,[19][20][21], NO complexes with transition metals (22, 23), or can result from a direct reaction between ⅐ NO and thiols in the presence of electron acceptors (24). It remains uncertain which pathway dominates in vivo and under what conditions it does so. It is also unclear which mechanism is responsible for the high specificity of S-nitrosylation, when only particular nucleophiles are targeted within a protein while others are left unmodified.⅐ NO reacts with O 2 according to the following stoichiometry:Because ⅐ NO and O 2 are better soluble in hydrophobic solvents than in water, with a partition coefficient (Q) Ͼ Ͼ 1 (25-27), areas of high hydrophobicity can act to increase the local concentration of these molecules by sequestering them from the surrounding aqueous phase. Under aerobic conditions, high local concentrations of ⅐ NO and O 2 in a hydrophobic phase, such as ...