Draft Genome Sequence of Pediococcus acidilactici Strain LPBC161, Isolated from Mature Coffee Cherries during Natural Fermentation

Muynarsk, Elisângela S. M.; Pereira, Gilberto Vinícius de Melo; Mesa, Dany; Soccol, Vanete Thomaz; Carvalho, Júlio César de; Pagnoncelli, Maria Giovana Binder; Soccol, Carlos Ricardo

doi:10.1128/mra.00332-19

Cited by 9 publications

(9 citation statements)

References 8 publications

(8 reference statements)

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“…Other contributions to microbiology and species identification in coffee fermentation were made; Boizet et al (1992) taxonomically characterized the bacteria Leuconostoc mesenteroide through DNA-DNA hybridization, morphology, and composition of protein structures, De Bruyne et al (2007) identified a new species of Leuconostoc genus (L. holapfelii), Schillinger et al (2008) developed a gender-specific PCR analysis method for rapid and reliable differentiation between two heterofermentative lactic acid bacteria (genera Leuconostoc and Weissella), and Muynarsk et al (2019) determined the genetic sequence of Pediococcus acidilactici.…”

Section: Discussionmentioning

confidence: 99%

Microorganisms in coffee fermentation: A bibliometric and systematic literature network analysis related to agriculture and beverage quality (1965-2019)

Cruz-O’Byrne

Gambasica

Ramirez-Vergara

2020

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The activity of microorganisms in coffee fermentation has a great influence on the composition of the beans and their beverage quality. In the present study, a bibliometric and systematic literature network analysis is made to examine the growth in the literature and the flow of knowledge in the field of study. The bibliometric information was retrieved from the Scopus database, obtaining 55 articles between 1965 and 2019. Frequencies, co-authorship, and co-occurrence indicators were analyzed using Microsoft Excel and VOSviewer software. Our findings show that most of the articles have been published in the last decade and mainly on microbial diversity and starter cultures. Furthermore, it was possible to identify the most productive authors, the most influential works, the main journals where articles of the most productive authors and the most influential works have been published, the most productive affiliation countries, the most used keywords, the co-authorship taking authors and countries as the unit of analysis, the keyword co-occurrence, and the spatial distribution of studies with their research topics. This is the first bibliometric and systematic literature network analysis carried out on research articles on microorganisms in coffee fermentation related to agriculture and beverage quality, which becomes a tool for researchers in making decisions for the building and development of strategic plans for future research by understanding the trends and status of existing research in the field of study in accordance with the authors, works, affiliation countries, study topics, and patterns of international collaboration and within the academic community.

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Section: Discussionmentioning

confidence: 99%

Microorganisms in coffee fermentation: A bibliometric and systematic literature network analysis related to agriculture and beverage quality (1965-2019)

Cruz-O’Byrne

Gambasica

Ramirez-Vergara

2020

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“…We then compared P. acidilactici PMC48 genome information and publicly available genome information of other strains of P. acidicactici (LPBC161 [21], S1 [22], MA18/5M [23], K3 [24], NGRI 0510Q [25]) ( Table 3). Although they were the same species, their genome sizes, GC contents, and numbers of CDS, rRNA, and tRNA Pediococcus acidilactici PMC48 strain genome.…”

Section: Study Of Genome Properties and Comparative Analysis Of The Smentioning

confidence: 99%

Melanin Bleaching and Melanogenesis Inhibition Effects of Pediococcus acidilactici PMC48 Isolated from Korean Perilla Leaf Kimchi

Kim¹,

Seo²,

Mahmud³

et al. 2020

J. Microbiol. Biotechnol.

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Overproduction and accumulation of melanin in the skin will darken the skin and cause skin disorders. So far, components that can inhibit tyrosinase, a melanin synthase of melanocytes, have been developed and used as ingredients of cosmetics or pharmaceutical products. However, most of existing substances can only inhibit the biosynthesis of melanin while melanin that is already synthesized and deposited is not directly decomposed. Thus, their effects in decreasing melanin concentration in the skin are weak. To overcome the limitation of existing therapeutic agents, we started to develop a substance that could directly biodegrade melanin. We screened traditional fermented food microorganisms for their abilities to direct biodegrade melanin. As a result, we found that a kimchi-derived Pediococcus acidilactici PMC48 had a direct melanin-degrading effect. This PMC48 strain is a new strain, different from P. acidilactici strains reported so far. It not only directly degrades melanin, but also has tyrosinase-inhibiting effect. It has a direct melanindecomposition effect. It exceeds existing melanin synthesis-inhibiting technology. It is expected to be of high value as a raw material for melanin degradation drugs and cosmetics.

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“…The combination of several sequences in the multilocus sequence typing was also used to increase the reliability of the identification (Peterson et al, 2005). More recently, the whole-genome sequencing using the nextgeneration sequencing (NGS) technology was also employed to sequence the genome of a lactic acid bacterial strain of Pediococcus acidilactici isolated during the coffee fermentation (Muynarsk et al, 2019).…”

Section: Strategies Used To Study the Coffee Microbiotamentioning

confidence: 99%

Coffee Microbiota and Its Potential Use in Sustainable Crop Management. A Review

Duong

Marraccini

Maeght

et al. 2020

Front. Sustain. Food Syst.

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Intensive coffee production is accompanied by several environmental issues, including soil degradation, biodiversity loss, and pollution due to the wide use of agrochemical inputs and wastes generated by processing. In addition, climate change is expected to decrease the suitability of cultivated areas while potentially increasing the distribution and impact of pests and diseases. In this context, the coffee microbiota has been increasingly studied over the past decades in order to improve the sustainability of the coffee production. Therefore, coffee associated microorganisms have been isolated and characterized in order to highlight their useful characteristics and study their potential use as sustainable alternatives to agrochemical inputs. Indeed, several microorganisms (including bacteria and fungi) are able to display plant growth-promoting capacities and/or biocontrol abilities toward coffee pests and diseases. Despite that numerous studies emphasized the potential of coffee-associated microorganisms under controlled environments, the present review highlights the lack of confirmation of such beneficial effects under field conditions. Nowadays, next-generation sequencing technologies allow to study coffee associated microorganisms with a metabarcoding/metagenomic approach. This strategy, which does not require cultivating microorganisms, now provides a deeper insight in the coffee-associated microbial communities and their implication not only in the coffee plant fitness but also in the quality of the final product. The present review aims at (i) providing an extensive description of coffee microbiota diversity both at the farming and processing levels, (ii) identifying the “coffee core microbiota,” (iii) making an overview of microbiota ability to promote coffee plant growth and to control its pests and diseases, and (iv) highlighting the microbiota potential to improve coffee quality and waste management sustainability.

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Draft Genome Sequence of Pediococcus acidilactici Strain LPBC161, Isolated from Mature Coffee Cherries during Natural Fermentation

Cited by 9 publications

References 8 publications

Microorganisms in coffee fermentation: A bibliometric and systematic literature network analysis related to agriculture and beverage quality (1965-2019)

Microorganisms in coffee fermentation: A bibliometric and systematic literature network analysis related to agriculture and beverage quality (1965-2019)

Melanin Bleaching and Melanogenesis Inhibition Effects of Pediococcus acidilactici PMC48 Isolated from Korean Perilla Leaf Kimchi

Coffee Microbiota and Its Potential Use in Sustainable Crop Management. A Review

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