A common theme in bacterial pathogenesis is the manipulation of eukaryotic cells by targeting the cytoskeleton. This is in most cases achieved either by modifying actin, or indirectly via activation of key regulators controlling actin dynamics such as Rho-GTPases. A novel group of bacterial virulence factors termed the WXXXE family has emerged as guanine nucleotide exchange factors (GEFs) for these GTPases. The precise mechanism of nucleotide exchange, however, has remained unclear. Here we report the structure of the WXXXE-protein IpgB2 from Shigella flexneri and its complex with human RhoA. We unambiguously identify IpgB2 as a bacterial RhoA-GEF and dissect the molecular mechanism of GDP release, an essential prerequisite for GTP binding. Our observations uncover that IpgB2 induces conformational changes on RhoA mimicking DbI-but not DOCK family GEFs. We also show that dissociation of the GDP⅐Mg 2؉ complex is preceded by the displacement of the metal ion to the ␣-phosphate of the nucleotide, diminishing its affinity to the GTPase. These data refine our understanding of the mode of action not only of WXXXE GEFs but also of mammalian GEFs of the DH/PH family.Remodeling of the actin cytoskeleton is essential for eukaryotic life, taking place in processes as diverse as division, motility, or cell-cell communication. The actin cytoskeleton is composed of actin monomers and helical filaments constantly assembling and disassembling at their ends, which is tightly regulated by multiple signaling pathways employing hundreds of actin-binding proteins. Most if not all signaling pathways converge on small GTPases of the Rho family, which are long recognized as key signaling switches inducing different actin filament structures (1-3). As effector interaction occurs in the GTP-bound state, their intrinsic GTPase activity is counterbalanced by guanine nucleotide exchange factors (GEFs) 2 driving GTP re-loading by increasing the intrinsic nucleotide dissociation rate (4). Activation of the name-giving family member RhoA induces cell contraction. This drives the formation of stress fiber bundles and focal adhesions in fibroblasts or endothelial cells, exerting force onto the substratum or neighboring cells (5). In neurons for instance, RhoA activation induces growth cone retraction (6). Other Rho family members trigger the formation of cell protrusions antagonistic to RhoA, with Rac1 and Cdc42 inducing lamellipodia and filopodia, respectively (7,8).Given their importance in cell physiology, Rho-GTPases have also emerged as key targets of pathogens modifying cell signaling or actin remodeling for their own needs (9). For instance, multiple bacterial toxins inhibiting RhoA, such as C3 exoenzyme of Clostridium botulinum, have served as invaluable tools to study RhoA function in vivo (10, 11). As an alternative to inhibition, Rho-GTPase signaling pathways driving different types of actin reorganization are also frequently bypassed or activated by pathogens, at least transiently, allowing them to induce their tight adherence to or ...