A facile method for cross-linking organic molecules has been developed by computational modeling, instrumentation design, and experimental research. Briefly, organic molecules are hit by H 2 with controllable kinetic energy in our novel apparatus where a high flux of hyperthermal H 2 is generated. When a C-H bond of the organic molecule is hit by H 2 at about 20 eV, efficient kinematic energy-transfer in the H 2 →H collision facilitates the C-H dissociation with nearly 100% reaction probability. When H 2 hits other atoms which are by nature much heavier than H 2 , mass disparity bars effective energy transfer and this both blocks undesirable bond dissociation and reduces unnecessary energy wastage. The recombination of the carbon radicals generated by the C-H cleavage efficiently completes the production of C-C cross-links at room temperature with no additional energy/chemicals requirements. In addition to these green chemistry merits, this new method is better than other cross-linking techniques which rely on prerequisite reactions to add cross-linkers to the organic molecules or additional reactants and additives.These promising features are validated by several cross-linking trials which demonstrate desirable mechanical, electrical, chemical, and biochemical changes while inducing no undesirable damage of chemical functionalities in the original molecules. † Electronic supplementary information (ESI) available: Additional data to further enrich the following aspects of scientific explanation and discussion: applications of HHIC, methods and materials, estimation of C-H and C-C bond cleavage thresholds and HHIC reaction rate, and spectroscopic data. See