Two acidic proteins, dentin sialoprotein (DSP) and dentin phosphoprotein (DPP), are present in the extracellular matrix of dentin but not in bone. These two proteins are expressed in odontoblasts and preameloblasts as a single cDNA transcript coding a large precursor protein termed dentin sialophosphoprotein (DSPP). DSPP is specifically cleaved into two unique proteins, DSP and DPP. However, the cleavage site(s) of DSPP and the mechanisms for regulating the cleavages are unknown. To identify the specific site(s) of DSPP that are cleaved when the initial translation product is converted to DSP and DPP, we performed a detailed analysis (Edman degradation and mass spectrometry) on selected tryptic peptides of a size originating from the COOH-terminal region of rat DSP. After cleavage with trypsin, the DSP fragments were separated by a twodimensional method (size-exclusion chromatography followed by reversed phase high performance liquid chromatography). We characterized 13 peptides from various regions of DSP. The analyses showed that peptide Ile 409 -Tyr 421 was the major COOH-terminal fragment, ending at Tyr 421 only 9 residues from the NH 2 terminus of DPP. Peptide Gln 385 -His 406 represented a second, minor COOH-terminal peptide that terminated at His 406 . Both of these residues are well beyond the COOH terminus predicted previously by two independent studies estimating that rat DSP contained 360 -370 amino acids. Careful studies on two peptides showed that, among 9 potential casein kinase II phosphorylation sites, 2 serines were phosphorylated. We found that rat DSP was heterogeneous with respect to phosphorylation, because this same peptide sequence eluted in two discrete peaks, one with 2 phosphoserines and the other having 1. The finding that 3 lysines just preceding the COOH termini were modified by a 43-Da substituent (possibly a carbamoyl substituent) suggests that the lysines in this region were particularly susceptible to attachment of this substituent.The dentin extracellular matrix is formed by highly specialized, postmitotic cells termed odontoblasts. These cells secrete a unique set of gene products similar to those expressed by osteoblasts in the formation of bone. The noncollagenous proteins include osteonectin, osteocalcin, osteopontin (OPN), 1 bone sialoprotein, and dentin matrix protein 1 (Dmp-1), found in bone and dentin, and dentin phosphoprotein (DPP) and dentin sialoprotein (DSP), occurring in dentin but not in bone (1-5). Because these noncollagenous proteins are very acidic and are secreted into the extracellular matrix during the formation and mineralization of these tissues, it is generally accepted that they play key biological roles in the formation of dentin and bone (6); however, details concerning their precise functions are unknown.Type I collagen is the most abundant organic constituent of dentin extracellular matrix, forming a fibrillar lattice for mineral deposition. DPP is the second most plentiful protein, accounting for as much as 50% of dentin noncollagenous proteins. Th...