Devosia marina sp. nov., isolated from deep seawater of the South China Sea, and reclassification of Devosia subaequoris as a later heterotypic synonym of Devosia soli

Liu, Yang; Du, Juan; Zhang, Jun; Lai, Qiliang; Shao, Zongze

doi:10.1099/ijsem.0.004130

Cited by 18 publications

(13 citation statements)

References 30 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…The isoprenoid quinones of CC-YST696 T were extracted and purified according to the method of Minnikin et al [42] and analysed by HPLC as described by Collins [43]. The respiratory quinone detected in CC-YST696 T was ubiquinone 10 (Q-10) and the major polyamine was spermidine, which was consistent with the descriptions of related species [1, 13,14].…”

Section: Polyamine Profile and Respiratory Systemsupporting

confidence: 59%

“…At the time of writing, there are about 28 species of the genus Devosia with validly published names and four members with invalid names have been listed (LPSN; https://lpsn.dsmz.de/genus/devosia). Representatives of the genus Devosia have also been isolated from isolated from soil [6], root nodules of Pueraria lobata and the aquatic legume Neptunia natans [7, 8], ginseng cultivation soil [9], alpine glacier cryoconite [10], deep-sea sediments [11, 12] and surface seawater [13, 14]. The typical characteristics of members of the genus include cells that are Gram-stain-negative, oval or rod-shaped, aerobic, oxidase-positive and non-spore-forming in nature.…”

Section: Introductionmentioning

confidence: 99%

See 1 more Smart Citation

Description of Devosia faecipullorum sp. nov., harboring antibiotic- and toxic compound-resistant genes, isolated from poultry manure

Lin

Tsai

Hameed

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

A polyphasic taxonomic approach was used to characterize a Gram-stain-negative bacterium, designated strain CC-YST696T, harbouring antibiotic- and toxic compound-resistace genes, isolated from poultry manure in Taiwan. Cells of CC-YST696T were short rods, motile with polar flagella, catalase- and oxidase-positive. Optimal growth occurred at 30 °С, pH 9 and with 1 % NaCl. The results of phylogenetic analyses based on 16S rRNA genes revealed a distinct taxonomic position attained by CC-YST696T associated with Devosia chinhatensis (97.9 % sequence identity), Devosia riboflavina (97.3 %) and Devosia indica (97.2 %), and with lower sequence similarity values to other species. Average nucleotide identity (ANI) values were 72.8–80.0 % (n=17) compared within the type strains of species of of the genus Devosia . CC-YST696T contained C16:0, C18:0, C18:1ω7c 11-methyl and C18:1ω6c/ C18:1ω7c as the predominant fatty acids. The polar lipid profile consisted of phosphatidylethanolamine, phosphatidylglycerol, two unidentified aminolipids, three unidentified glycolipids, two unidentified phospholipids and three unidentified lipids. The DNA G+C content was 62.2 mol% and the predominant quinone was ubiquinone Q-10. On the basis of its distinct phylogenetic, phenotypic and chemotaxonomic traits together with results of comparative 16S rRNA gene sequence and ANI analyses, strain CC-YST696T is proposed to represent a novel species of the genus Devosia , for which the name Devosia faecipullorum sp. nov. (type strain CC-YST696T=BCRC 81284T=JCM 34167T) is proposed.

show abstract

Section: Polyamine Profile and Respiratory Systemsupporting

confidence: 59%

Section: Introductionmentioning

confidence: 99%

Description of Devosia faecipullorum sp. nov., harboring antibiotic- and toxic compound-resistant genes, isolated from poultry manure

Lin

Tsai

Hameed

et al. 2021

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

show abstract

“…At the time of writing, the genus Devosia comprises 30 species with validly published names (https://lpsn.dsmz.de/genus/devosia). Members of the genus are ubiquitous in diverse ecological niches including nitrifying inoculum [3], root nodules [4], the roots of Nitraria sibirica [5], soils [6][7][8][9][10], hexachlorocyclohexane dump sites [11,12], alpine glacier cryoconite [13], deep-sea sediments [14][15][16], seawater [17,18], beach sediment [19] and subterranean sediment [20]. It has been reported that the genus has some functions of detoxification and degradation of organic pollutants [21,22].…”

mentioning

confidence: 99%

Devosia salina sp. nov., isolated from South China Sea sediment

Chen

Yan

et al. 2022

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

An aerobic, Gram-stain-negative, rod-shaped and motile strain, designated SCS-3T, was isolated from deep-sea sediment of the South China Sea. Phylogenetic analysis based on the 16S rRNA gene sequence similarities revealed that strain SCS-3T represented a novel species of the genus Devosia , with closely related strains ' Devosia sediminis ' MSA67T (98.61 %), Devosia riboflavina IFO13584T (98.22 %) and Devosia indica IO390501T (97.72 %). The G+C content of the genomic DNA is 63.44 mol%. The digital DNA–DNA hybridization values with ' D. sediminis ' MSA67T, D. riboflavina IFO13584T and D. indica IO390501T were 24.50, 21.8 and 24.80 %, respectively. The major polar lipids of strain SCS-3T were diphosphatidylglycerol, phosphatidylglycerol and three unidentified glycolipids. Ubiquinone-10 was the sole isoprenoid quinone, and C16 : 0, C18 : 1 ω7c 11-methyl and summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c) were the major fatty acids. Based on polyphasic taxonomic data, strain SCS-3T represents a novel species of the genus Devosia , for which the name Devosia salina sp. nov. is proposed. The type strain is SCS-3T (=JCM 34403T=GDMCC 1.2221T).

show abstract

“…For analysis of the chemotaxonomic features of strain SCS 3–6, a series of experiments 27 were carried out to determine the content of the respiratory quinones, polar lipids, and fatty acids of closely related type strains ( Echinicola shivajiensis JCM 17847 T and Echinicola sediminis KCTC 52495 T ) and SCS 3–6 with cell biomass obtained from cultures grown in marine agar (Difco) for 2 days at 28 °C. Respiratory quinones were extracted from freeze-dried cells (100 mg) with chloroform/methanol (2:1) and analyzed via the HPLC system 28 .…”

Section: Methodsmentioning

confidence: 99%

Comparative genome characterization of Echinicola marina sp. nov., isolated from deep-sea sediment provide insight into carotenoid biosynthetic gene cluster evolution

Chen

et al. 2021

Sci Rep

View full text Add to dashboard Cite

Echinicola, carotenoid-pigmented bacteria, are isolated from various hypersaline environments. Carotenoid accumulation in response to salt stress can stabilize the cell membrane in order to survive. A pink-colored strain SCS 3–6 was isolated from the deep-sea sediment of the South China Sea. Growth was found to occur at 10–45 °C. The strain could tolerate 10% (w/v) NaCl concentration and grow at pH 5–9. The complete genome of SCS 3–6 comprises 5053 putative genes with a total 5,693,670 bp and an average G + C content of 40.11 mol%. The 16S rRNA gene sequence analysis indicated that strain SCS 3–6 was affiliated with the genus Echinicola, with the closely strains were Echinicola arenosa CAU 1574T (98.29%)and Echinicola shivajiensis AK12T (97.98%). For Echinicola species with available genome sequences, pairwise comparisons for average nucleotide identity (ANI) and in silico DNA-DNA hybridization (DDH) revealed ANIb values from 70.77 to 74.71%, ANIm values from 82.72 to 88.88%, and DDH values from 18.00 to 23.40%. To identify their genomic features, we compared their genomes with those of other Echinicola species. Phylogenetic analysis showed that strain SCS 3–6 formed a monophyletic clade. Genomic analysis revealed that strain SCS 3–6 possessed a complete synthetic pathway of carotenoid and speculated that the production was astaxanthin. Based on phenotypic and genotypic analyses in this study, strain SCS 3–6 is considered to represent a novel species of the genus Echinicola for which the name Echinicola marina sp. nov. is proposed. The type strain is SCS 3-6T (= GDMCC 1.2220T = JCM 34403T).

show abstract

Devosia marina sp. nov., isolated from deep seawater of the South China Sea, and reclassification of Devosia subaequoris as a later heterotypic synonym of Devosia soli

Cited by 18 publications

References 30 publications

Description of Devosia faecipullorum sp. nov., harboring antibiotic- and toxic compound-resistant genes, isolated from poultry manure

Description of Devosia faecipullorum sp. nov., harboring antibiotic- and toxic compound-resistant genes, isolated from poultry manure

Devosia salina sp. nov., isolated from South China Sea sediment

Comparative genome characterization of Echinicola marina sp. nov., isolated from deep-sea sediment provide insight into carotenoid biosynthetic gene cluster evolution

Contact Info

Product

Resources

About