Antibody-oligonucleotide conjugates (AOCs) are a versatile class
of chimeric biomolecules for therapeutics
and biotechnological applications. Most widely employed chemical labeling
methods for proteins are based on targeting of Lys or Cys residues
that leads to mixed stoichiometry in the degree of conjugation and
may interfere with antigen binding, thus, compromising the function
of the antibody. A site-specific oligonucleotide conjugation technology
providing full control over valency in mild reaction conditions would
be an advancement to the state-of-the-art in bioconjugation. Herein,
we demonstrate the production of single-chain variable fragment antibodies
with fused SpyCatcher (scFv-SpyCatcher, monovalent) and alkaline phosphatase-SpyCatcher
(scFv-AP-SpyCatcher, bivalent) on C-terminus and their conjugation
to SpyTag002-oligonucleotide in phosphate-buffered saline (PBS). The
formation of a covalent isopeptide bond between the protein and SpyTag002-oligonucleotide
was confirmed by sodium dodecyl sulfate polyacrylamide gel electrophoresis
(SDS-PAGE) analysis, and the functionality of the obtained AOCs was
confirmed in immuno-polymerase chain reaction (PCR) assays for the
detection of microcystin-LR and 17β-estradiol. Based on time-resolved
fluorescence immunoassays with scFv-AP fusion constructs, we observed
that the SpyCatcher and SpyCatcher-SpyTag002-oligonucleotide part
lowered the absolute signal obtained from the assay by 27.6 and 48.4%
at 2 nM and by 26.2 and 27.6% at 100 pM microcystin-LR and 17β-estradiol
concentrations, respectively. Nevertheless, the overall sensitivity
of the immuno-PCR assays was similar to the time-resolved fluorescence
immunoassays performed with the same components. In this study, vectors
for SpyCatcher-fusion construction were created for directional cloning
with
Sfi
I
sites enabling the rapid
generation of AOC constructs for site-specific SpyTag-oligonucleotide
conjugation.