Mitochondria isolated from mesophyll protoplasts differed from mitochondria isolated directly from leaves ofAvena sativa in that protoplast mitochondria (a) had a lower overall respiratory capacity, (b) were less able to use low concentrations of exogenous NADH, (c) did not respond rapidly or strongly to added NAD, (d) appeared to accumulate more oxaloacetate, and (e) oxidized both succinate and tetramethyl-p-phenylene-diamine (an electron donor for cytochrome oxidase) more slowly than did leaf mitochondria. It is concluded that cytochrome oxidase activity was inhibited, the external NADH dehydrogenase had a reduced affinity for NADH, succinate oxidation was inhibited, NAD and oxaloacetate porters were probably inhibited, and accessibility to respiratory paths may have been reduced in protoplast mitochondria. The results also suggest that there was a reduced affinity of a succinate porter for this substrate in oat mitochondria. In addition, all oat mitochondria required salicylhydroxamic acid (SHAM) as well as cyanide to block malate and succinate oxidation. Malate oxidation that did not appear to saturate the cytochrome pathway was sensitive to SHAM in the absence of cyanide, suggesting that the oat mitochondria studied had concomitant alternative and subsaturating cytochrome oxidase pathway activity.Protoplasts are uniquely useful as models for cells. The absence of a cell wall allows ready access to the plasma membrane (22) and facilitates rapid cell fractionation (14). Protoplasts additionally provide the convenience of a homogeneous suspension (19). Oat protoplasts are being used to assess intracellular distribution of metabolites (14), regulation of ion and amino acid flux (19,22), biosynthetic responses to pathogens (29), and the photosynthetic capacity of single cells (15). Consequently, the extent and nature of metabolic differences between protoplasts and cells must be assessed.Comparisons between oat protoplasts and oat cells have not produced a consistent picture. Polyamine ratios differ (13) and protoplasts are less able to transport amino acids (28) (24) and simulate the solar spectrum (2). Primary leaves were harvested 7 to 8 h after the beginning of the photoperiod 8 d after planting.Preparation of Protoplasts. Protoplasts were isolated and purified as described by Rubinstein (27) with the modifications that the concentration of Cellulysin was 0.4% and the concentration of T20 dextran3 and sorbitol in the gradient were 14% (w/w) and 0.44 M, respectively. A low level of incandescent light (about 15 w/m2) was provided during digestion of the cell wall.Purified protoplasts were centrifuged at 400g for 2.5 min in wash medium (1 mM Hepes, 2 mM Mes, 0.6 M sorbitol, 29