A previous study has illustrated that the ␣V3 integrin served as the functional receptor for West Nile virus (WNV) entry into cells. Domain III (DIII) of WNV envelope protein (E) was postulated to mediate virus binding to the cellular receptor. In this study, the specificity and affinity binding of WNV E DIII protein to ␣V3 integrin was confirmed with co-immunoprecipitation and receptor competition assay. Binding of WNV E DIII protein to ␣V3 integrin induced the phosphorylation of focal adhesion kinase that is required to mediate ligand-receptor internalization into cells. A novel platform was then developed using the atomic force microscopy to measure this specific binding force between WNV E DIII protein and the cellular receptor, ␣V3 integrin. The single protein pair-interacting force measured was in the range of 45 ؎ 5 piconewtons. This interacting force was highly specific as minimal force was measured in the WNV E DIII protein interaction with ␣V5 integrin molecules and heparan sulfate. These experiments provided an insight to quantitate virus-receptor interaction. Force measurement using atomic force microscopy can serve to quantitatively analyze the effect of candidate drugs that modulate virus-host receptor affinity.The family Flaviviridae is positive-sense, single-stranded RNA viruses that replicate in the cytoplasm of infected cells. Many members of the three genera (Flavivirus, Pestivirus, and Hepacivirus) belonging to this family are medically important human pathogens. West Nile virus (WNV), 4 an arthropod-transmitted Flavivirus, is the causative agent of the disease syndrome named West Nile fever including a spectrum of associated complication (meningoencephalitis) (1). This is a re-emerging arthropod-borne disease that is responsible for recent large outbreaks in the Western hemisphere. In 2004 there were 2313 human infections and 79 deaths reported in the United States (2). Currently, there is no vaccine or antiviral agent against this pathogenic virus.Crystallography data on the ectodomain of the Flavivirus E protein reveals three distinct domains: a central domain designated as domain I (DI), an elongated dimerization region designated as domain II (DII), and domain III (DIII), having an immunoglobulin-like constant domain (3). Both DII and DIII of the E protein have been suggested to be important for binding to the cellular receptor (4 -7). Chu and Ng (8) have recently documented the involvement of ␣V3 integrin in mediating the infectious entry of WNV into host cells. Specific binding between WNV and ␣V3 integrin can be illustrated by functional blocking antibodies against ␣V3 integrin and its subunits. The high antagonistic effect of recombinant WNV DIII protein on WNV infection in both mammalian and mosquito cells has also strongly suggested that DIII of WNV E protein functions as the receptor binding domain and is responsible for the recognition and attachment to the cellular receptor (7).In this study the specific interaction between the DIII of WNV E protein and its cellular rece...