Detecting Adaptive Trait Introgression Between<i>Iris fulva</i>and<i>I. brevicaulis</i>in Highly Selective Field Conditions

Martin, Noland H.; Bouck, Amy C.; Arnold, Michael L.

doi:10.1534/genetics.105.053538

Cited by 146 publications

(212 citation statements)

References 71 publications

(70 reference statements)

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“…Natural selection can cause fixation of advantageous alleles that have a positive fitness effect and potential to speed up adaptation in new genetic background of hybrids (De Carvalho et al 2010;Martin et al 2006). Two loci in our hybrid dataset showed increased frequency towards alleles specific to P. sylvestris at calcium-dependent protein kinase (Pr4-5) and alleles specific to P. mugo at mys transcription factor (Pr4-10).…”

Section: Discussionmentioning

confidence: 86%

Interspecific gene flow and ecological selection in a pine (Pinus sp.) contact zone

2014

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Nucleotide polymorphisms in a set of nuclear genes were studied in a sympatric population of pines Pinus mugo and Pinus sylvestris that includes trees classified as pure species and polycormic (multi-stemmed) individuals of potentially hybrid origin. Patterns of genetic diversity were compared between those groups of samples and to the reference allopatric populations of the species in Europe. Polymorphisms at the gene loci clearly distinguished pure parental species as measured by conventional frequency-based statistics and Bayesian assignment of samples into separate genetic clusters. Most individuals classified based on phenotypic assessments as putative hybrids were genetically very similar to P. mugo showing no existing average net divergence and genetic assignment to the same genetic cluster. On the other hand, individuals of P. sylvestris showed homogenous genetic background to the reference populations of the species from Central and Northern Europe. Ten individuals of admixed genetic composition were found in all three groups of samples; however, the majority of hybrids except one individual were identified across the samples classified as P. mugo and polycormic pines. Those trees that contained a mixture of nuclear gene haplotypes observed in the reference populations of pure species and cpDNA from P. mugo, most likely represent the first generation of hybrids. Analysis of the allelic frequency spectra and compound neutrality tests identified deviations from neutrality at several genes. This contact zone seems suitable for selection of a mapping population both in hybrid and parental species for admixture mapping to effectively search for polymorphisms that may play role in species adaptive variation and speciation.

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Section: Discussionmentioning

confidence: 86%

Interspecific gene flow and ecological selection in a pine (Pinus sp.) contact zone

2014

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“…Quéré et al. (2012) suggested that WEM was possibly a “hybrid swarm.” One of those features is the observation of increased fitness that should allow for ecological success to translate into evolutionary success (see, e.g., Pereira et al., 2014 for a marine example)—which could reflect adaptive introgression promoting the maintenance of hybrids (Hedrick, 2013; Martin, Bouck, & Arnold, 2006). Patterns of survival of the WEM × WEM cross go against high fitness of these “hybrids.” Adaptive introgression patterns or “swarming” at the center of the distribution of parental forms seems relatively common in other fish species (e.g., Machado‐Schiaffino, Juanes, & Garcia‐Vazquez, 2010; Roques, Sévigny, & Bernatchez, 2001; Sinama et al., 2013; Stemshorn, Reed, Nolte, & Tautz, 2011; Walters et al., 2008).…”

Section: Discussionmentioning

confidence: 99%

Metapopulation patterns of additive and nonadditive genetic variance in the sea bass (Dicentrarchus labrax)

Guinand

Vandeputte

Dupont‐Nivet³

et al. 2017

Ecology and Evolution

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Describing and explaining the geographic within‐species variation in phenotypes (“phenogeography”) in the sea over a species distribution range is central to our understanding of a variety of eco‐evolutionary topics. However, phenogeographic studies that have a large potential to investigate adaptive variation are overcome by phylogeographic studies, still mainly focusing on neutral markers. How genotypic and phenotypic data could covary over large geographic scales remains poorly understood in marine species. We crossed 75 noninbred sires (five origins) and 26 dams (two origins; each side of a hybrid zone) in a factorial diallel cross in order to investigate geographic variation for early survival and sex ratio in the metapopulation of the European sea bass (Dicentrarchus labrax), a highly prized marine fish species. Full‐sib families (N = 1,950) were produced and reared in a common environment. Parentage assignment of 7,200 individuals was performed with seven microsatellite markers. Generalized linear models showed significant additive effects for both traits and pleiotropy between traits. A significant nonadditive genetic effect was detected. Different expression of traits and distinct relative performances were found for reciprocal crosses involving populations located on each side of the main hybrid zone located at the Almeria‐Oran front, illustrating asymmetric reproductive isolation. The poor fitness performance observed for the Western Mediterranean population of sea bass is discussed as it represents the main source of seed hatchery production, but also because it potentially illustrates nonadaptive introgression and maladaptation.

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“…Introgressed alleles may often have a positive fitness effect in their new genetic background and traits responsible for adaptation can be transferred between species (Martin et al 2006). Foreign alleles in different genetic or ecological backgrounds will show a range of fitness outcomes, but only those that increase the adaptive optimum in a given environment will effectively introgress.…”

Section: Discussionmentioning

confidence: 99%

Hybridization in contact zone between temperate European pine species

Wachowiak

Żukowska

Wójkiewicz

et al. 2016

Tree Genetics & Genomes

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Hybridization studies are important to advance our understanding of the interspecific gene flow and its evolutionary consequences in closely related species. Hybridization and admixture patterns were assessed in a contact zone and reference populations of European pine species using sequence data from 26 nuclear genes and a species-diagnostic cpDNA marker. Reference populations formed three distinct genetic clusters comprising Pinus sylvestris, Pinus mugo/Pinus uliginosa, and Pinus uncinata. Evidence of population structure was found only in P. uliginosa. Based on phenotypic characteristics and molecular data, we identified five groups of individuals in the contact zone in Poland, comprising forms of the parental species and intermediates that were most probably the result of interspecific crosses. A combination of nuclear gene sequence data and a diagnostic organelle marker were used to show that hybridization is frequent in the contact zone and results in hybrid trees with distinct phenotypic identity. The influence of selection in maintaining hybrid phenotypes in environments unsuited to parental species was inferred from nucleotide polymorphism data. A lack of admixture in reference populations suggests that hybridization has not occurred during post-glacial migration and so the contact zone represents a distinct, active example of ongoing evolution. Pine populations in this zone will be a valuable system for studying the genetic basis of hybrid advantage in environmental conditions untypical of pure parental species.

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Detecting Adaptive Trait Introgression BetweenIris fulvaandI. brevicaulisin Highly Selective Field Conditions

Cited by 146 publications

References 71 publications

Interspecific gene flow and ecological selection in a pine (Pinus sp.) contact zone

Interspecific gene flow and ecological selection in a pine (Pinus sp.) contact zone

Metapopulation patterns of additive and nonadditive genetic variance in the sea bass (Dicentrarchus labrax)

Hybridization in contact zone between temperate European pine species

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