BackgroundDendritic cells localize throughout the body, where they can sense
and capture invading pathogens to induce protective immunity. Hence, harnessing
the biology of tissue-resident dendritic cells is fundamental for the rational
design of vaccines against pathogens.MethodsHerein, we characterized the transcriptomes of four
antigen-presenting cell subsets from the human vagina (Langerhans cells,
CD14- and CD14+ dendritic
cells, macrophages) by microarray, at both the transcript and network level, and
compared them to those of three skin dendritic cell subsets and blood myeloid
dendritic cells.ResultsWe found that genomic fingerprints of antigen-presenting cells are
significantly influenced by the tissue of origin as well as by individual subsets.
Nonetheless, CD14+ populations from both vagina and
skin are geared towards innate immunity and pro-inflammatory responses, whereas
CD14- populations, particularly skin and vaginal
Langerhans cells, and vaginal CD14- dendritic cells,
display both Th2-inducing and regulatory phenotypes. We also identified new
phenotypic and functional biomarkers of vaginal antigen-presenting cell
subsets.ConclusionsWe provide a transcriptional database of 87 microarray samples
spanning eight antigen-presenting cell populations in the human vagina, skin and
blood. Altogether, these data provide molecular information that will further help
characterize human tissue antigen-presenting cell lineages and their functions.
Data from this study can guide the design of mucosal vaccines against sexually
transmitted pathogens.Electronic supplementary materialThe online version of this article (doi:10.1186/s13073-014-0098-y) contains supplementary material, which is available to authorized
users.