Bacteriophages are ubiquitous in the oceans and often reprogram various metabolisms of host cells by the auxiliary metabolic genes (AMGs). Here, we found polysaccharide could effectively induce the production of different types of bacteriophages in two deep-sea Lentisphaerae strains, as well as other members belonging to the PVC (Planctomycetes-Verrucomicrobia-Chlamydia) superphylum. We found these bacteriophages were released via a chronic style and could assist their host in metabolizing polysaccharide through AMGs. Moreover, bacteriophages induced from Lentisphaerae strain WC36 by the supplement of polysaccharide could effectively assist a marine bacterium in metabolizing and utilizing polysaccharide to promote its growth. We also demonstrated for the first time that chronic phages released from Lentisphaerae strain WC36 facilitated the enrichment and cultivation of deep-sea difficult-to-culture microbes. Our findings shed light on the poorly explored marine virus-host interaction and bring us closer to understanding the potential role of viruses in marine ecosystems.