1. The quenching by ubiquinone (Q) of the intrinsic fluorescence of tryptophan residues within ubiquinolcytochrome-c reductase (complex 111) has been exploited to provide direct information on the interaction between these two components of the mitochondrial respiratory chain.2. The fluorescence quenching data have been corrected for inner filter effects and interpreted using the classical Stern-Volmer and modified Stern-Volmer plots. The latter of these plots allows computation of both the dissociation constant (Kd) of complex formation between ubiquinone and complex 111, and the percentage of fluorophores accessible to quenching.3. It is found that different Q homologues bind to complex 111 with different affinities depending upon the length of the isoprenoid chain: 2,3-dimethoxy-5-methyl-6-decyl-l ,Cbenzoquinone, an analogue of Q2, exhibits the same Kd as Q2. Furthermore, the accessibility of fluorophores to quenching was lower for Q1 than for the other quinones tested.4. The binding affinity of Qz to complex I11 depends upon the redox state of the enzyme. 5. Addition of the complex I11 inhibitor, antimycin, has very little effect on the binding affinity or on the 6. Addition of the inhibitor myxothiazol has a similar effect to reducing complex I11 with ascorbate. 7. Reconstitution of complex I11 into asolectin lipid vesicles gives similar qualitative results to the enzyme in accessibility of fluorophores to the quencher.solution regarding both the redox state and the addition of inhibitors.It is well established that ubiquinones are involved in the electron transport between flavoprotein dehydrogenases (e.g. succinate dehydrogenase) and the ubiquinol -cytochrome-c oxidoreductase (also known as complex 111) in the mitochondrial respiratory chain [l -41. However, there is some uncertainty over how ubiquinone (Q) functions; for example, does it function as a homogeneous mobile pool [4, 51 or as a protein-bound prosthetic group [6,7]? It is possible that this point, and others, can be clarified by a direct investigation of the binding/dissociation of ubiquinone with its redox partners in the mitochondrial respiratory chain. To date, the main body of work concerning ubiquinone has concentrated on a dynamic o r kinetic approach [2-5, 8, 91. To our knowledge the binding properties of ubiquinone have not been addressed directly, despite the fact that Q-binding proteins have been isolated from different respiratory chain complexes of beef heart mitochondria [6, 71.Here we present a novel approach to the process of Qbinding to the respiratory chain complex, with reference in particular to the binding of ubiquinone to complex 111. It should be noted that the substrate of complex 111 is actually