Complete Genome Sequence of Pseudomonas viridiflava CFBP 1590, Isolated from Diseased Cherry in France

Ruinelli, Michela; Blom, Jochen; Pothier, Joël F.

doi:10.1128/genomea.00662-17

Cited by 6 publications

(5 citation statements)

References 13 publications

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“…Species including Pseudomonas alcaligenes , Pseudomonas stutzeri , and Pseudomonas viridiflava (but not the human pathogenic P. aeruginosa) were found in YSB after 36 -140 days. These data suggest their active role in colonizing the sensor surfaces that is consistent with prior pure culture studies (Ruinelli et al 2017, Sommer et al 2017, Suzuki et al 2013).…”

Section: Resultssupporting

confidence: 90%

Factors Shaping Young and Mature Bacterial Biofilm Communities in Two Drinking Water Distribution Networks

Cheng

Leifels

Miccolis

et al. 2021

Preprint

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The presence of biofilms in drinking water distribution systems (DWDS) can affect both water quality and system integrity; yet these systems remain poorly studied due to lack of accessibility. We established two independent full-scale DWDS Testbeds (A and B) on two different campuses situated in a tropical urban environment and equipped them with online sensors. Testbed B experienced higher levels of monochloramine and lower water age than Testbed A within the campus. Based on long amplicon-sequencing of bacterial 16S rRNA genes extracted from the mature biofilms (MPB) growing on pipes and young biofilms (YSB) growing on the sensors, a core community was identified in the two testbeds. The relative abundances of operational taxonomic units at the family level, including Mycobacteriaceae, Methylobacteriaceae, Rhodospirillaceae, Nitrosomonadaceae, and Moraxellaceae, were consistent for MPB and YSB on each campus. The MPB community was found to be influenced by conductivity, sample age, and pipe diameter as determined by both canonical correlation analysis and fuzzy set ordination. MPB displayed higher α-diversity based on Hill numbers than YSB; in general, second order Hill numbers correlated positively with conductivity and sample age, but negatively with ORP and nitrite. Pseudomonas spp. together with Bacillus spp. likely initiated biofilm formation of YSB on Testbed A under conditions of reduced monochloramine and high water age. Significant levels of orthophosphate were detected in YSB samples at two stations and associated with higher levels of stagnation based on long-term differential turbidity measurement (DTM). Orthophosphate and DTM may act as indicators of the biofilm growth potential within DWDS.

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Section: Resultssupporting

confidence: 90%

Factors Shaping Young and Mature Bacterial Biofilm Communities in Two Drinking Water Distribution Networks

Cheng

Leifels

Miccolis

et al. 2021

Preprint

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“…P . viridiflava causes foliar and stem necrosis as well as stem and root rot in a wide range of plants such as tomato, melon and eggplant 113–115 . Finally, in insects, Wohlfahrtiimonas chitiniclastica , the most frequently identified species of the genus Wohlfahrtiimonas is known to cause human infections 21,66 .…”

Section: Discussionmentioning

confidence: 99%

Exogenous and endogenous microbiomes of wild-caught Phormia regina (Diptera: Calliphoridae) flies from a suburban farm by 16S rRNA gene sequencing

Deguenon

Travanty

Zhu

et al. 2019

Sci Rep

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The black blow fly, Phormia regina (Meigen) (Diptera: Calliphoridae) is one of the most abundant carrion flies in North America. Calliphorids are important in agriculture and animal production, veterinary sciences, forensics and medical entomology. While the role of flies in the epidemiology of human and animal diseases is an active area of research, little is known about the microorganisms associated with these insects. We examined the diversity of wild-caught black blow fly endogenous (internal body) and exogenous (external body) microbial communities using 16S rRNA gene sequencing. Overall, 27 phyla, 171 families and 533 genera were detected, and diversity was significantly higher (P < 0.05) on external body surfaces. At the genus level, Dysgonomonas, Ignatzschineria, Acinetobacter, Vagococcus, Myroides, and Wohlfahrtiimonas were predominant. Cloning and sequencing of nearly full-length fragments of the 16S rRNA gene showed that some of the species identified are known to be pathogenic to humans, animals, and plants. Myroides odoratimimus and Acinetobacter radioresistens are well-known, multi-drug resistant bacteria. These results provide a snapshot of the microbial communities harbored by adult black blow flies and call for more comprehensive studies to better characterize the role these flies may play in the transmission of pathogenic microorganisms.

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“…In the past several years, genome sequences of P . viridiflava have been generated and used for analyses and taxonomic classification (Dillon, Thakur, et al, 2019 ; Gomila et al, 2017 ; Ruinelli et al, 2017 ; Samad et al, 2017 ; Thakur et al, 2016 ). There are over 1,500 P .…”

Section: Delineation Within the P Syringae Species Complexmentioning

confidence: 99%

“…The first complete assembly of a genome sequence for P . viridiflava was of strain CFBP‐1590, a strain from PG7 isolated from diseased cherry in France (Ruinelli et al, 2017 ); this genome is 6.09 Mb, has a G + C content of 59.2%, and contains 5,283 protein‐coding sequences (accession no. LT855380).…”

Section: Delineation Within the P Syringae Species Complexmentioning

confidence: 99%

Pseudomonas viridiflava: An internal outsider of the Pseudomonas syringae species complex

Lipps

Samac²

2021

Molecular Plant Pathology

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Complete Genome Sequence of Pseudomonas viridiflava CFBP 1590, Isolated from Diseased Cherry in France

Abstract: Pseudomonas viridiflava causes foliar and stem necrosis, as well as stem and root rot on a wide range of plants. We report here the first complete genome of a P. viridiflava strain, isolated from diseased tissue of a cherry tree.

Cited by 6 publications

References 13 publications

Factors Shaping Young and Mature Bacterial Biofilm Communities in Two Drinking Water Distribution Networks

Factors Shaping Young and Mature Bacterial Biofilm Communities in Two Drinking Water Distribution Networks

Exogenous and endogenous microbiomes of wild-caught Phormia regina (Diptera: Calliphoridae) flies from a suburban farm by 16S rRNA gene sequencing

Pseudomonas viridiflava: An internal outsider of the Pseudomonas syringae species complex

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