Complete Genome Sequence of Edwardsiella tarda Isolate FL95-01, Recovered from Channel Catfish

Reichley, Stephen R.; Waldbieser, Geoffrey C.; Tekedar, Hasan C.; Lawrence, Mark L.; Griffin, Matt J.

doi:10.1128/genomea.00682-15

Cited by 18 publications

(15 citation statements)

References 25 publications

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“…Genetic fingerprints of case isolates (R18‐14‐1; R18‐14‐2; R18‐14‐13; R18‐14‐16; R18‐35‐2) with other Edwardsiella anguillarum isolates recovered from the same farm (Eco2413; Eco2417) and an outbreak in cultured tilapia in Colombia (R17‐63). Reference: E. anguillarum LADL 05–105 (Reichley, Waldbieser, Lawrence, et al, ), E. piscicida S11‐285 (Reichley, Waldbieser, Tekedar, Lawrence, & Griffin, ) and E. tarda FL95‐01 (Reichley, Waldbieser, Tekedar, Lawrence, & Griffin, ) isolates , as well as an E. coli reference isolate, were included in the analysis. Amplification reactions were performed using: (a) Edwardsiella anguillarum ‐specific primers, (b) ERIC I & II primers and (c) BOX primers.…”

Section: Antimicrobial Minimum Inhibitory Concentrations (Mics) Againmentioning

confidence: 99%

“…Reference: E. anguillarum LADL 05-105 , E. piscicida S11-285 (Reichley, Waldbieser, Tekedar, Lawrence, & Griffin, 2016) and E. tarda FL95-01 (Reichley, Waldbieser, Tekedar, Lawrence, & Griffin, 2015) isolates, as well as an E. coli reference isolate, were included in the analysis. Amplification reactions were performed using: (a) Edwardsiella anguillarum-specific primers, (b) ERIC I & II primers and (c) BOX primers.…”

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confidence: 99%

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Pathologic changes in cultured Nile tilapia (Oreochromis niloticus) associated with an outbreak of Edwardsiella anguillarum

Armwood

Camus

López-Porras

et al. 2019

Journal of Fish Diseases

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Section: Antimicrobial Minimum Inhibitory Concentrations (Mics) Againmentioning

confidence: 99%

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confidence: 99%

Pathologic changes in cultured Nile tilapia (Oreochromis niloticus) associated with an outbreak of Edwardsiella anguillarum

Armwood

Camus

López-Porras

et al. 2019

Journal of Fish Diseases

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“…ASE201307 genome contained a single circular chromosome of 3.68 M with G+C 57.09% content, which was similar to that (3.62M and 57.3%) of FL95.01 (Reichley, Waldbieser, Tekedar, Lawrence & Griffin, ). However, the G+C content of E .…”

Section: Discussionmentioning

confidence: 62%

Comparative genomic insights into the taxonomy ofEdwardsiella tardaisolated from different hosts: Marine, freshwater and migratory fish

Shao

Guo

et al. 2017

Aquac Res

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Edwardsiella tarda, a Gram-negative member of the family Enterobacteriaceae, has been isolated from many animal species worldwide, especially fish species. Its broad host range indicates the diversity in taxonomy, which attracted the attention of many researchers. Here, we added genome of E. tarda strain isolated from freshwater fish to comparative genomics study for the first time. We sequenced and assembled the genome of E. tarda ASE201307 which was isolated from freshwater Asian swamp eel. ASE201307 genome contained a single circular chromosome of 3.68M with G+C 57.09% content. Comparative genomics including SNP calling, synteny block, Core/Pan genes analysis and phylogeny analysis was conducted among ASE201307 and other Edwardsiella strains isolated from different fish species.Results of SNP analysis and synteny block demonstrated the close relative of ASE201307, FL95.01 and DT which were all isolated from freshwater fish. In further analysis heat map of dispensable genes and phylogenetic tree, all E. tarda strains were divided into two groups. One was isolated from freshwater fish and the other was isolated from marine/migratory fish. Based on all studies above, we proposed the living environment of hosts as a new taxonomic character and divided E. tarda isolated from diseased fish into freshwater group and marine/migratory group.

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“…CP001600) (25), and 83.4% (dDDH, 25.5%) with E. tarda isolate FL95-01 (GenBank accession no. CP011359) (26). …”

Section: Genome Announcementmentioning

confidence: 99%

Complete Genome Sequence of Edwardsiella piscicida Isolate S11-285 Recovered from Channel Catfish ( Ictalurus punctatus ) in Mississippi, USA

Reichley

Waldbieser²,

Tekedar

et al. 2016

Genome Announc

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Complete Genome Sequence of Edwardsiella tarda Isolate FL95-01, Recovered from Channel Catfish

Abstract: Edwardsiella tarda is a Gram-negative facultative anaerobe that has been isolated from fish, reptiles, amphibians, and mammals, including humans. This is a report of the complete and annotated genome of isolate FL95-01, recovered from channel catfish (Ictalurus punctatus).

Cited by 18 publications

References 25 publications

Pathologic changes in cultured Nile tilapia (Oreochromis niloticus) associated with an outbreak of Edwardsiella anguillarum

Pathologic changes in cultured Nile tilapia (Oreochromis niloticus) associated with an outbreak of Edwardsiella anguillarum

Comparative genomic insights into the taxonomy ofEdwardsiella tardaisolated from different hosts: Marine, freshwater and migratory fish

Complete Genome Sequence of Edwardsiella piscicida Isolate S11-285 Recovered from Channel Catfish ( Ictalurus punctatus ) in Mississippi, USA

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