Coding-Complete Genome Sequence of Swine Influenza Virus Isolate A/Swine/Karaganda/04/2020 (H1N1) from Kazakhstan

Klivleyeva, N. G.; Ongarbayeva, N. S.; Korotetskiy, Ilya S.; Glebova, T. I.; Saktaganov, N. T.; Shamenova, M. G.; Baimakhanova, Baiken; Shevtsov, Alexandr; Amirgazin, Asylulan; Berezin, V.E.; Webby, Richard J.

doi:10.1128/mra.00786-21

Cited by 3 publications

(1 citation statement)

References 9 publications

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“…Influenza viruses of the Orthomyxoviridae family occupy a dominant position among a large group of respiratory infections [7]. They include a wide range of human and animal pathogens [8][9][10][11][12][13]. The range of influenza virus epidemic strains is continually changing.…”

Section: Introductionmentioning

confidence: 99%

Spread of Pathogens Causing Respiratory Viral Diseases Before and During CoVID-19 Pandemic in Kazakhstan

КЛИВЛЕЕВА¹,

Lukmanova²,

Glebova³

et al. 2023

Indian J Microbiol

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swabs were collected from children under 17 years of age (60.75%). In 702 samples (9.85%) pathogens of respiratory infections of non-influenza etiology were detected, including adenovirus, bocavirus, coronavirus, metapneumovirus, paramyxovirus types I-IV, respiratory syncytial virus, and rhinovirus. At the same time, both before and during the COVID-19 pandemic, different influenza virus variants cocirculation (A/H1N1, A/H3N2, and type B) were discovered, with a predominance of viruses with the antigenic formula A/H1N1. The results of the study indicate the need for continuous monitoring of the viral pathogens spread, which will expand the existing knowledge of the viral etiology of respiratory diseases and highlight the importance of viruses in the respiratory infections occurrence.

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Section: Introductionmentioning

confidence: 99%

Spread of Pathogens Causing Respiratory Viral Diseases Before and During CoVID-19 Pandemic in Kazakhstan

КЛИВЛЕЕВА¹,

Lukmanova²,

Glebova³

et al. 2023

Indian J Microbiol

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Influenza A virus surveillance in domestic pigs in Kazakhstan 2018-2021

Lukmanova,

Klivleyeva,

Glebova

et al. 2024

Cienc. Rural

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This study described the results of a surveillance program monitoring circulation of influenza A viruses among domestic pigs (Sus domesticus) in Kazakhstan during 2018-2021. PCR data derived from 2,513 samples (nasopharyngeal swabs) collected from swine on large pig complexes and peasant farms located in different regions of Kazakhstan revealed that about 5% of samples were positive for influenza A virus RNA. This result suggested low levels of influenza A virus circulation in Kazakhstan. Subtyping of a set of samples revealed that the main strains circulating in 2018-2019 were A/H1N1 and A/H3N2.Surveillance conducted in 2020-2021 identified only A/H1N1 viruses in swine. The PCR data were confirmed by isolation of six strains: five influenza A/H1N1 viruses and one A/H3N2 virus.

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Influenza A viruses circulating in dogs - a review of the scientific literature

Klivleyeva¹,

Glebova²,

Shamenova³

et al. 2022

Open Vet J

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Influenza A viruses (IAV) cause persistent epidemics and occasional human pandemics, leading to considerable economic losses. The ecology and epidemiology of IAV are very complex and the emergence of novel zoonotic pathogens is one of the greatest challenges in the healthcare. IAV are characterized by genetic and antigenic variability resulting from a combination of high mutation rates and a segmented genome that provides the ability to rapidly change and adapt to new hosts. In this context, available scientific evidence is of great importance for understanding the epidemiology and evolution of influenza viruses. The present review summarizes original research papers and IAV infections reported in dogs all over the world. Reports of interspecies transmission of equine influenza viruses (EIV) H3N2 from birds to dogs, as well as double and triple reassortant strains resulting from reassortment of avian, human and canine strains have amplified the genetic variety of canine influenza viruses. A total of 146 articles were deemed acceptable by PubMed and the Google Scholar database and were therefore included in this review. The largest number of research articles (n=68) were published in Asia, followed by the Americas (n=44), Europe (n=31), Africa (n=2) and Australia (n=1). Publications are conventionally divided into three categories. The first category (largest group) included modern articles published from 2011 to the present (n=93). The second group consisted of publications from 2000 to 2010 (n=46). Single papers of 1919, 1931, 1963, 1972, 1975, and 1992 were also used, which was necessary to emphasize the history of the study of the ecology and evolution of the IAV circulating among various mammalian species. The largest number of publications occurred in 2010 (n=18) and 2015 (n=11), which is associated with IAV outbreaks observed at that time in the dog population in America, Europe and Asia. In general, these findings raise concerns that dogs, may mediate the adaptation of IAVs to zoonotic transmission and therefore serve as alternative hosts for genetic reassortment of these viruses. The global concern and significant threat to public health from the present COVID-19 pandemic confirms the necessity for active surveillance of zoonotic viral diseases with pandemic potential.

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Coding-Complete Genome Sequence of Swine Influenza Virus Isolate A/Swine/Karaganda/04/2020 (H1N1) from Kazakhstan

Cited by 3 publications

References 9 publications

Spread of Pathogens Causing Respiratory Viral Diseases Before and During CoVID-19 Pandemic in Kazakhstan

Spread of Pathogens Causing Respiratory Viral Diseases Before and During CoVID-19 Pandemic in Kazakhstan

Influenza A virus surveillance in domestic pigs in Kazakhstan 2018-2021

Influenza A viruses circulating in dogs - a review of the scientific literature

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