This review rigorously investigates the evolving pharmacological landscape for metabolic disorders, focusing on Phenylketonuria (PKU), Inflammatory Bowel Disease (IBD), Galactosemia, Medium Chain Acyl CoA Dehydrogenase Deficiency (MCADD), and Prader-Willi Syndrome (PWS). Adhering to PRISMA guidelines, we meticulously searched databases such as NHS, Rare Diseases, Pubchem, Clinical Trials, DrugBank, PubMed, and Mayo Clinic, spanning from January 2000 to December 2023. Our objective was to evaluate the efficacy and potential of both FDA-approved drugs and those in clinical trials. The review revealed significant advancements in the treatment of disorders like PKU, with drugs like Kuvan facilitating improved metabolic functioning. In IBD, treatments have progressed to specifically target inflammatory pathways using drugs like Azathioprine and Mesalazine, shifting away from broader immunosuppressants. Galactosemia and MCADD, disorders without definitive cures, have shown potential in clinical trials with investigational drugs like AT-007 and Triheptanoin. Particularly intriguing are the ongoing trials for PWS, a complex syndrome, where Oral NNZ-2591 and Oxytocin demonstrate promising potential. These findings highlight the critical importance of specialized treatment strategies, tailored to address the unique metabolic challenges posed by each disorder. The diverse nature of these disorders necessitates a multifaceted approach, combining current scientific knowledge with innovative drug development. This study not only contributes to a better understanding of existing treatments but also emphasizes the need for continued research and development to uncover more effective and personalized therapeutic options for managing these varied metabolic disorders.