Summary• The effect is reported here of cytochalasin E isolated from the fungus Rosellinia necatrix on photosynthesis in young leaves of Malus domestica (apple).• Cytochalasin E was administered via the petiole to excised leaves. The chlorophyll fluorescence emission spectrum and time resolved fluorescence decay were measured up to the point where visible leaf damage was observed.• Within 2 h, the ratio of fluorescence emission at 730 nm decreased with respect to the peak at 690 nm. Over 6 h a small blue shift in the 690 nm emission band to 685 nm was seen. The time resolved fluorescence decay showed changes over a similar timescale after administration of cytochalasin E. The control decay could be fitted by two components, τ 1 , 112 ps, τ 2 , 402 ps, but after 6 h treatment with cytochalasin E the decay required a further component τ 3 , 4.25 ns for a good fit.• Cytochalasin E has a direct effect on photosynthesis, possibly as a result of impairment of light harvesting. This might partially account for the pathogenicity of the root infecting R. necatrix . Fluorescence techniques may therefore provide an early detection system for the fungus, a necessary prerequisite for development of a control strategy.